Literature DB >> 9600924

Free energy of burying hydrophobic residues in the interface between protein subunits.

B Vallone1, A E Miele, P Vecchini, E Chiancone, M Brunori.   

Abstract

We have obtained an experimental estimate of the free energy change associated with variations at the interface between protein subunits, a subject that has raised considerable interest since the concept of accessible surface area was introduced by Lee and Richards [Lee, B. & Richards, F. M. (1971) J. Mol. Biol. 55, 379-400]. We determined by analytical ultracentrifugation the dimer-tetramer equilibrium constant of five single and three double mutants of human Hb. One mutation is at the stationary alpha1 beta1 interface, and all of the others are at the sliding alpha1 beta2 interface where cleavage of the tetramer into dimers and ligand-linked allosteric changes are known to occur. A surprisingly good linear correlation between the change in the free energy of association of the mutants and the change in buried hydrophobic surface area was obtained, after corrections for the energetic cost of losing steric complementarity at the alphabeta dimer interface. The slope yields an interface stabilization free energy of -15 +/- 1.2 cal/mol upon burial of 1 A2 of hydrophobic surface, in very good agreement with the theoretical estimate given by Eisenberg and McLachlan [Eisenberg, D. & McLachlan, A. D. (1986) Nature (London) 319, 199-203].

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Year:  1998        PMID: 9600924      PMCID: PMC27592          DOI: 10.1073/pnas.95.11.6103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  New algorithm to model protein-protein recognition based on surface complementarity. Applications to antibody-antigen docking.

Authors:  P H Walls; M J Sternberg
Journal:  J Mol Biol       Date:  1992-11-05       Impact factor: 5.469

2.  THE PROPERTIES AND INTERACTIONS OF THE ISOLATER ALPHA AND BETA CHAINS OF HUMAN HAEMOGLOBIN. I. SEDIMENTATION AND ELECTROPHORETIC BEHAVIOUR.

Authors:  E BUCCI; C FRONTICELLI; E CHIANCONE; J WYMAN; E ANTONINI; A ROSSI-FANELLI
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

Review 3.  The folding of an enzyme. II. Substructure of barnase and the contribution of different interactions to protein stability.

Authors:  L Serrano; J T Kellis; P Cann; A Matouschek; A R Fersht
Journal:  J Mol Biol       Date:  1992-04-05       Impact factor: 5.469

4.  Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles.

Authors:  G Schreiber; A R Fersht
Journal:  J Mol Biol       Date:  1995-04-28       Impact factor: 5.469

Review 5.  Principles of protein-protein interactions.

Authors:  S Jones; J M Thornton
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

6.  Comparison of atomic solvation parametric sets: applicability and limitations in protein folding and binding.

Authors:  A H Juffer; F Eisenhaber; S J Hubbard; D Walther; P Argos
Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

7.  Site-directed mutagenesis in hemoglobin. Effect of some mutations at protein interfaces.

Authors:  B Vallone; P Vecchini; V Cavalli; M Brunori
Journal:  FEBS Lett       Date:  1993-06-14       Impact factor: 4.124

8.  Empirical scale of side-chain conformational entropy in protein folding.

Authors:  S D Pickett; M J Sternberg
Journal:  J Mol Biol       Date:  1993-06-05       Impact factor: 5.469

9.  Hydrophobicity of amino acid residues in globular proteins.

Authors:  G D Rose; A R Geselowitz; G J Lesser; R H Lee; M H Zehfus
Journal:  Science       Date:  1985-08-30       Impact factor: 47.728

10.  The structure of human carbonmonoxy haemoglobin at 2.7 A resolution.

Authors:  J M Baldwin
Journal:  J Mol Biol       Date:  1980-01-15       Impact factor: 5.469

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  34 in total

1.  Scoring functions: a view from the bench.

Authors:  J R Tame
Journal:  J Comput Aided Mol Des       Date:  1999-03       Impact factor: 3.686

2.  Drying-induced hydrophobic polymer collapse.

Authors:  Pieter Rein ten Wolde; David Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

3.  Probing solvation decay length in order to characterize hydrophobicity-induced bead-bead attractive interactions in polymer chains.

Authors:  Siddhartha Das; Suman Chakraborty
Journal:  J Mol Model       Date:  2010-11-26       Impact factor: 1.810

4.  A novel method reveals that solvent water favors polyproline II over beta-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA).

Authors:  Patrick J Fleming; Nicholas C Fitzkee; Mihaly Mezei; Rajgopal Srinivasan; George D Rose
Journal:  Protein Sci       Date:  2004-12-02       Impact factor: 6.725

5.  The interface between hepatitis B virus capsid proteins affects self-assembly, pregenomic RNA packaging, and reverse transcription.

Authors:  Zhenning Tan; Karolyn Pionek; Nuruddin Unchwaniwala; Megan L Maguire; Daniel D Loeb; Adam Zlotnick
Journal:  J Virol       Date:  2015-01-07       Impact factor: 5.103

6.  In silico model of an antenna of a phycobilisome and energy transfer rates determination by theoretical Förster approach.

Authors:  Maximiliano Figueroa; José Martínez-Oyanedel; Adelio R Matamala; Jorge Dagnino-Leone; Claudia Mella; Rubén Fritz; José Sepúlveda-Ugarte; Marta Bunster
Journal:  Protein Sci       Date:  2012-11-06       Impact factor: 6.725

7.  Effect of surfactant hydrophobicity on the pathway for unfolding of ubiquitin.

Authors:  Bryan F Shaw; Grégory F Schneider; George M Whitesides
Journal:  J Am Chem Soc       Date:  2012-10-31       Impact factor: 15.419

8.  Structural basis for cooperative RNA binding and export complex assembly by HIV Rev.

Authors:  Matthew D Daugherty; Bella Liu; Alan D Frankel
Journal:  Nat Struct Mol Biol       Date:  2010-10-17       Impact factor: 15.369

Review 9.  A medicinal chemist's guide to molecular interactions.

Authors:  Caterina Bissantz; Bernd Kuhn; Martin Stahl
Journal:  J Med Chem       Date:  2010-07-22       Impact factor: 7.446

10.  Predicting Molecular Crowding Effects in Ion-RNA Interactions.

Authors:  Tao Yu; Yuhong Zhu; Zhaojian He; Shi-Jie Chen
Journal:  J Phys Chem B       Date:  2016-08-12       Impact factor: 2.991

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