Literature DB >> 21110052

Probing solvation decay length in order to characterize hydrophobicity-induced bead-bead attractive interactions in polymer chains.

Siddhartha Das1, Suman Chakraborty.   

Abstract

In this paper, we quantitatively demonstrate that exponentially decaying attractive potentials can effectively mimic strong hydrophobic interactions between monomer units of a polymer chain dissolved in aqueous solvent. Classical approaches to modeling hydrophobic solvation interactions are based on invariant attractive length scales. However, we demonstrate here that the solvation interaction decay length may need to be posed as a function of the relative separation distances and the sizes of the interacting species (or beads or monomers) to replicate the necessary physical interactions. As an illustrative example, we derive a universal scaling relationship for a given solute-solvent combination between the solvation decay length, the bead radius, and the distance between the interacting beads. With our formalism, the hydrophobic component of the net attractive interaction between monomer units can be synergistically accounted for within the unified framework of a simple exponentially decaying potential law, where the characteristic decay length incorporates the distinctive and critical physical features of the underlying interaction. The present formalism, even in a mesoscopic computational framework, is capable of incorporating the essential physics of the appropriate solute-size dependence and solvent-interaction dependence in the hydrophobic force estimation, without explicitly resolving the underlying molecular level details.

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Year:  2010        PMID: 21110052     DOI: 10.1007/s00894-010-0899-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  33 in total

1.  Dynamics of polymer chain collapse into compact states.

Authors:  D C Rapaport
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-10-27

2.  Kinetics of the polymer collapse transition: the role of hydrodynamics.

Authors:  N Kikuchi; J F Ryder; C M Pooley; J M Yeomans
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-06-30

3.  Critical importance of length-scale dependence in implicit modeling of hydrophobic interactions.

Authors:  Jianhan Chen; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2007-02-09       Impact factor: 15.419

4.  Potential of mean force of hydrophobic association: dependence on solute size.

Authors:  Emil Sobolewski; Mariusz Makowski; Cezary Czaplewski; Adam Liwo; Stanisław Ołdziej; Harold A Scheraga
Journal:  J Phys Chem B       Date:  2007-08-22       Impact factor: 2.991

5.  Application of the level-set method to the implicit solvation of nonpolar molecules.

Authors:  Li-Tien Cheng; Joachim Dzubiella; J Andrew McCammon; Bo Li
Journal:  J Chem Phys       Date:  2007-08-28       Impact factor: 3.488

6.  Free energy of burying hydrophobic residues in the interface between protein subunits.

Authors:  B Vallone; A E Miele; P Vecchini; E Chiancone; M Brunori
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

7.  Mesoscopic description of solvent effects on polymer dynamics.

Authors:  Song Hi Lee; Raymond Kapral
Journal:  J Chem Phys       Date:  2006-06-07       Impact factor: 3.488

8.  Comparison of atomic solvation parametric sets: applicability and limitations in protein folding and binding.

Authors:  A H Juffer; F Eisenhaber; S J Hubbard; D Walther; P Argos
Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

9.  Hydrophobic and ionic interactions in nanosized water droplets.

Authors:  S Vaitheeswaran; D Thirumalai
Journal:  J Am Chem Soc       Date:  2006-10-18       Impact factor: 15.419

10.  Metastable intermediates in the condensation of semiflexible polymers.

Authors:  B Schnurr; F Gittes; F C MacKintosh
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-06-14
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