Literature DB >> 9587660

Conformational dynamics and enzyme activity.

J M Yon1, D Perahia, C Ghélis.   

Abstract

Conformational flexibility and structural fluctuations play an important role in enzyme activity. A great variety of internal motions ranging over different time scales and of different amplitudes are involved in the catalytic cycle. These different types of motions and their functional consequences are considered in the light of experimental data and theoretical analyses. The conformational changes upon substrate binding, and particularly the hinge-bending motion which occurs in enzymes made of two domains, are analyzed from several well documented examples. The conformational events accompanying the different steps of the catalytic cycle are discussed. The last section concerns the motions involved in the allosteric transition which regulates the enzyme activity.

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Year:  1998        PMID: 9587660     DOI: 10.1016/s0300-9084(98)80054-0

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  22 in total

1.  Conformational behavior of ionic self-complementary peptides.

Authors:  M Altman; P Lee; A Rich; S Zhang
Journal:  Protein Sci       Date:  2000-06       Impact factor: 6.725

2.  Impact of oxidation on protein therapeutics: conformational dynamics of intact and oxidized acid-β-glucocerebrosidase at near-physiological pH.

Authors:  Cedric E Bobst; John J Thomas; Paul A Salinas; Philip Savickas; Igor A Kaltashov
Journal:  Protein Sci       Date:  2010-12       Impact factor: 6.725

3.  Pulsed EPR characterization of HIV-1 protease conformational sampling and inhibitor-induced population shifts.

Authors:  Zhanglong Liu; Thomas M Casey; Mandy E Blackburn; Xi Huang; Linh Pham; Ian Mitchelle S de Vera; Jeffrey D Carter; Jamie L Kear-Scott; Angelo M Veloro; Luis Galiano; Gail E Fanucci
Journal:  Phys Chem Chem Phys       Date:  2016-02-17       Impact factor: 3.676

4.  NMR dynamics of PSE-4 beta-lactamase: an interplay of ps-ns order and mus-ms motions in the active site.

Authors:  Sébastien Morin; Stéphane M Gagné
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

5.  The enzyme aromatic amine dehydrogenase induces a substrate conformation crucial for promoting vibration that significantly reduces the effective potential energy barrier to proton transfer.

Authors:  Linus O Johannissen; Nigel S Scrutton; Michael J Sutcliffe
Journal:  J R Soc Interface       Date:  2008-12-06       Impact factor: 4.118

6.  β-Lactamase of Mycobacterium tuberculosis Shows Dynamics in the Active Site That Increase upon Inhibitor Binding.

Authors:  Wouter Elings; Anamika Gaur; Anneloes J Blok; Monika Timmer; Hugo van Ingen; Marcellus Ubbink
Journal:  Antimicrob Agents Chemother       Date:  2020-02-21       Impact factor: 5.191

7.  As-Rigid-As-Possible molecular interpolation paths.

Authors:  Minh Khoa Nguyen; Léonard Jaillet; Stéphane Redon
Journal:  J Comput Aided Mol Des       Date:  2017-03-20       Impact factor: 3.686

8.  Enhancing the activity of Bacillus circulans xylanase by modulating the flexibility of the hinge region.

Authors:  Fukura Kazuyo; So Yeon Hong; Young Joo Yeon; Jeong Chan Joo; Young Je Yoo
Journal:  J Ind Microbiol Biotechnol       Date:  2014-05-22       Impact factor: 3.346

9.  Conformational changes involving ammonia tunnel formation and allosteric control in GMP synthetase.

Authors:  Justin C Oliver; Ravidra Gudihal; John W Burgner; Anthony M Pedley; Alexander T Zwierko; V Jo Davisson; Rebecca S Linger
Journal:  Arch Biochem Biophys       Date:  2014-01-13       Impact factor: 4.013

10.  Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model.

Authors:  Wenjun Zheng; Mustafa Tekpinar
Journal:  BMC Struct Biol       Date:  2009-07-10
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