Literature DB >> 19486690

NMR dynamics of PSE-4 beta-lactamase: an interplay of ps-ns order and mus-ms motions in the active site.

Sébastien Morin1, Stéphane M Gagné.   

Abstract

The backbone dynamics for the 29.5 kDa class A beta-lactamase PSE-4 is presented. This solution NMR study was performed using multiple field (15)N spin relaxation and amide exchange data in the EX2 regime. Analysis was carried out with the relax program and includes the Lipari-Szabo model-free approach. Showing similarity to the homologous enzyme TEM-1, PSE-4 is very rigid on the ps-ns timescale, although slower mus-ms motions are present for several residues; this is especially true near the active site. However, significant dynamics differences exist between the two homologs for several important residues. Moreover, our data support the presence of a motion of the Omega loop first detected using molecular dynamics simulations on TEM-1. Thus, class A beta-lactamases appear to be a class of highly ordered proteins on the ps-ns timescale despite their efficient catalytic activity and high plasticity toward several different beta-lactam antibiotics. Most importantly, catalytically relevant mus-ms motions are present in the active site, suggesting an important role in catalysis.

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Year:  2009        PMID: 19486690      PMCID: PMC2711454          DOI: 10.1016/j.bpj.2009.02.068

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  42 in total

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4.  Isotope effects in peptide group hydrogen exchange.

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Authors:  N Tjandra; P Wingfield; S Stahl; A Bax
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6.  Primary structure effects on peptide group hydrogen exchange.

Authors:  Y Bai; J S Milne; L Mayne; S W Englander
Journal:  Proteins       Date:  1993-09

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Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

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  14 in total

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2.  β-Lactamase of Mycobacterium tuberculosis Shows Dynamics in the Active Site That Increase upon Inhibitor Binding.

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Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

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Journal:  J Biomol NMR       Date:  2011-05-27       Impact factor: 2.835

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6.  15N, 13C and 1H backbone resonance assignments of an artificially engineered TEM-1/PSE-4 class A β-lactamase chimera and its deconvoluted mutant.

Authors:  Sophie M C Gobeil; Donald Gagné; Nicolas Doucet; Joelle N Pelletier
Journal:  Biomol NMR Assign       Date:  2015-09-19       Impact factor: 0.746

7.  Toho-1 β-lactamase: backbone chemical shift assignments and changes in dynamics upon binding with avibactam.

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9.  Defining the architecture of KPC-2 Carbapenemase: identifying allosteric networks to fight antibiotics resistance.

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10.  Chimeric β-lactamases: global conservation of parental function and fast time-scale dynamics with increased slow motions.

Authors:  Christopher M Clouthier; Sébastien Morin; Sophie M C Gobeil; Nicolas Doucet; Jonathan Blanchet; Elisabeth Nguyen; Stéphane M Gagné; Joelle N Pelletier
Journal:  PLoS One       Date:  2012-12-21       Impact factor: 3.240

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