Literature DB >> 9585518

Transient kinetic analysis of adenosine 5'-triphosphate binding-induced conformational changes in the allosteric chaperonin GroEL.

O Yifrach1, A Horovitz.   

Abstract

GroEL with an intrinsic fluorescent probe was generated by introducing the mutation Phe44 --> Trp. Different concentrations of ATP were rapidly mixed with GroEL containing this mutation, and the time-resolved change in fluorescence emission, upon excitation at 280 nm, was followed. Three kinetic phases were observed: a fast phase with a large amplitude and two slower phases with small amplitudes. The phases were assigned by (i) determining their dependence on ATP concentration; (ii) measuring their sensitivity to the mutation Arg197 --> Ala, which decreases cooperativity in ATP binding; and (iii) by carrying out mixing experiments of GroEL also with ADP, ATPgammaS, and ATP without K+. The apparent rate constant corresponding to the fast phase displays a bi-sigmoidal dependence on ATP concentration with Hill coefficients that are strikingly similar to those determined in steady-state experiments. This phase, which reflects ATP-induced conformational changes, is sensitive to the mutation Arg197 --> Ala in a manner that parallels steady-state experiments. The rate of conformational change in the presence of ATP is >100 sec-1, which is fast relative to most protein folding rates, whereas in the absence of ATP it is approximately 0.7 s-1. The second phase reflects the transition from an ATP-bound state of GroEL to an ADP-bound state. The third phase, with the smallest amplitude, reflects release of residual contaminants. The results in this study are found to be consistent with the nested model for cooperativity in ATP binding by GroEL [Yifrach, O., and Horovitz, A. (1995) Biochemistry 34, 5303-5308].

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Year:  1998        PMID: 9585518     DOI: 10.1021/bi980370o

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

1.  Phi value analysis of heterogeneity in pathways of allosteric transitions: Evidence for parallel pathways of ATP-induced conformational changes in a GroEL ring.

Authors:  Amnon Horovitz; Amnon Amir; Oded Danziger; Galit Kafri
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-18       Impact factor: 11.205

2.  Conversion of the allosteric transition of GroEL from concerted to sequential by the single mutation Asp-155 -> Ala.

Authors:  Oded Danziger; Dalia Rivenzon-Segal; Sharon G Wolf; Amnon Horovitz
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

3.  Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle.

Authors:  Jose H Pereira; Corie Y Ralston; Nicholai R Douglas; Daniel Meyer; Kelly M Knee; Daniel R Goulet; Jonathan A King; Judith Frydman; Paul D Adams
Journal:  J Biol Chem       Date:  2010-06-23       Impact factor: 5.157

4.  Glu257 in GroEL is a sensor involved in coupling polypeptide substrate binding to stimulation of ATP hydrolysis.

Authors:  Oded Danziger; Liat Shimon; Amnon Horovitz
Journal:  Protein Sci       Date:  2006-05-02       Impact factor: 6.725

5.  Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins.

Authors:  Stefanie Reissmann; Charles Parnot; Christopher R Booth; Wah Chiu; Judith Frydman
Journal:  Nat Struct Mol Biol       Date:  2007-04-29       Impact factor: 15.369

6.  Chaperonin overexpression promotes genetic variation and enzyme evolution.

Authors:  Nobuhiko Tokuriki; Dan S Tawfik
Journal:  Nature       Date:  2009-06-04       Impact factor: 49.962

7.  Kinetic analysis of conformational changes of GroEL based on the fluorescence of tyrosine 506.

Authors:  Kazuhiko Hosono; Taro Ueno; Hideki Taguchi; Fumihiro Motojima; Tamotsu Zako; Masasuke Yoshida; Takashi Funatsu
Journal:  Protein J       Date:  2008-12       Impact factor: 2.371

8.  Sequential action of ATP-dependent subunit conformational change and interaction between helical protrusions in the closure of the built-in lid of group II chaperonins.

Authors:  Taro Kanzaki; Ryo Iizuka; Kazunobu Takahashi; Kosuke Maki; Rie Masuda; Muhamad Sahlan; Hugo Yébenes; José M Valpuesta; Toshihiko Oka; Masahiro Furutani; Noriyuki Ishii; Kunihiro Kuwajima; Masafumi Yohda
Journal:  J Biol Chem       Date:  2008-10-13       Impact factor: 5.157

9.  Design of an optical switch for studying conformational dynamics in individual molecules of GroEL.

Authors:  Gabriel A Frank; Yakov Kipnis; Elena Smolensky; Shirley S Daube; Amnon Horovitz; Gilad Haran
Journal:  Bioconjug Chem       Date:  2008-06-24       Impact factor: 4.774

10.  Concerted release of substrate domains from GroEL by ATP is demonstrated with FRET.

Authors:  Niv Papo; Yakov Kipnis; Gilad Haran; Amnon Horovitz
Journal:  J Mol Biol       Date:  2008-05-17       Impact factor: 5.469

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