Literature DB >> 19494908

Chaperonin overexpression promotes genetic variation and enzyme evolution.

Nobuhiko Tokuriki1, Dan S Tawfik.   

Abstract

Most protein mutations, and mutations that alter protein functions in particular, undermine stability and are therefore deleterious. Chaperones, or heat-shock proteins, are often implicated in buffering mutations, and could thus facilitate the acquisition of neutral genetic diversity and the rate of adaptation. We examined the ability of the Escherichia coli GroEL/GroES chaperonins to buffer destabilizing and adaptive mutations. Here we show that mutational drifts performed in vitro with four different enzymes indicated that GroEL/GroES overexpression doubled the number of accumulating mutations, and promoted the folding of enzyme variants carrying mutations in the protein core and/or mutations with higher destabilizing effects (destabilization energies of >3.5 kcal mol(-)(1), on average, versus approximately 1 kcal mol(-)(1) in the absence of GroEL/GroES). The divergence of modified enzymatic specificity occurred much faster under GroEL/GroES overexpression, in terms of the number of adapted variants (>or=2-fold) and their improved specificity and activity (>or=10-fold). These results indicate that protein stability is a major constraint in protein evolution, and buffering mechanisms such as chaperonins are key in alleviating this constraint.

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Year:  2009        PMID: 19494908     DOI: 10.1038/nature08009

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  44 in total

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Authors:  D Thirumalai; G H Lorimer
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001

Review 2.  Between genotype and phenotype: protein chaperones and evolvability.

Authors:  Suzanne L Rutherford
Journal:  Nat Rev Genet       Date:  2003-04       Impact factor: 53.242

3.  Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations.

Authors:  Raphael Guerois; Jens Erik Nielsen; Luis Serrano
Journal:  J Mol Biol       Date:  2002-07-05       Impact factor: 5.469

Review 4.  GroEL and the maintenance of bacterial endosymbiosis.

Authors:  Mario Ali Fares; Andrés Moya; Eladio Barrio
Journal:  Trends Genet       Date:  2004-09       Impact factor: 11.639

5.  Shared promiscuous activities and evolutionary features in various members of the amidohydrolase superfamily.

Authors:  Cintia Roodveldt; Dan S Tawfik
Journal:  Biochemistry       Date:  2005-09-27       Impact factor: 3.162

6.  Asymmetric segregation of protein aggregates is associated with cellular aging and rejuvenation.

Authors:  Ariel B Lindner; Richard Madden; Alice Demarez; Eric J Stewart; François Taddei
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

7.  The stability effects of protein mutations appear to be universally distributed.

Authors:  Nobuhiko Tokuriki; Francois Stricher; Joost Schymkowitz; Luis Serrano; Dan S Tawfik
Journal:  J Mol Biol       Date:  2007-03-31       Impact factor: 5.469

8.  Continuity in evolution: on the nature of transitions.

Authors:  W Fontana; P Schuster
Journal:  Science       Date:  1998-05-29       Impact factor: 47.728

9.  Directed evolution of phosphotriesterase from Pseudomonas diminuta for heterologous expression in Escherichia coli results in stabilization of the metal-free state.

Authors:  C Roodveldt; D S Tawfik
Journal:  Protein Eng Des Sel       Date:  2005-01       Impact factor: 1.650

10.  Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research.

Authors:  Masanari Kitagawa; Takeshi Ara; Mohammad Arifuzzaman; Tomoko Ioka-Nakamichi; Eiji Inamoto; Hiromi Toyonaga; Hirotada Mori
Journal:  DNA Res       Date:  2006-01-09       Impact factor: 4.458

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  141 in total

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Authors:  Mikko Taipale; Daniel F Jarosz; Susan Lindquist
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06-09       Impact factor: 94.444

Review 2.  The role of robustness in phenotypic adaptation and innovation.

Authors:  Andreas Wagner
Journal:  Proc Biol Sci       Date:  2012-01-04       Impact factor: 5.349

3.  Predicting mutation outcome from early stochastic variation in genetic interaction partners.

Authors:  Alejandro Burga; M Olivia Casanueva; Ben Lehner
Journal:  Nature       Date:  2011-12-07       Impact factor: 49.962

Review 4.  Extreme genome reduction in symbiotic bacteria.

Authors:  John P McCutcheon; Nancy A Moran
Journal:  Nat Rev Microbiol       Date:  2011-11-08       Impact factor: 60.633

5.  Protein folding: Chaperoning protein evolution.

Authors:  Paolo De Los Rios; Pierre Goloubinoff
Journal:  Nat Chem Biol       Date:  2012-02-15       Impact factor: 15.040

6.  Indole-3-glycerol-phosphate synthase is recognized by a cold-inducible group II chaperonin in Thermococcus kodakarensis.

Authors:  Le Gao; Atsushi Danno; Sayaka Fujii; Wakao Fukuda; Tadayuki Imanaka; Shinsuke Fujiwara
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

7.  Dynamics of thermodynamically stable, kinetically trapped, and inhibitor-bound states of pepsin.

Authors:  Derek R Dee; Brenna Myers; Rickey Y Yada
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

8.  Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59.

Authors:  Olga Khersonsky; Gert Kiss; Daniela Röthlisberger; Orly Dym; Shira Albeck; Kendall N Houk; David Baker; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-08       Impact factor: 11.205

Review 9.  Decanalizing thinking on genetic canalization.

Authors:  Kerry Geiler-Samerotte; Federica M O Sartori; Mark L Siegal
Journal:  Semin Cell Dev Biol       Date:  2018-05-24       Impact factor: 7.727

Review 10.  Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge.

Authors:  Karan S Hingorani; Lila M Gierasch
Journal:  Curr Opin Struct Biol       Date:  2014-01-14       Impact factor: 6.809

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