Literature DB >> 18572960

Design of an optical switch for studying conformational dynamics in individual molecules of GroEL.

Gabriel A Frank1, Yakov Kipnis, Elena Smolensky, Shirley S Daube, Amnon Horovitz, Gilad Haran.   

Abstract

We describe the design of an optical switch in the chaperonin GroEL that is opened and closed by its ATP- and cochaperonin GroES-driven conformational changes. The switch, based on a fluorophore and a quencher, is engineered into the single-ring variant of the chaperone, and shows dramatic modulation of its fluorescent intensity in response to the transition of the protein between its allosteric states. It, therefore, forms a sensitive probe for the dynamics of the allosteric transitions of this machine, both in the bulk and in single molecules.

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Year:  2008        PMID: 18572960      PMCID: PMC2632776          DOI: 10.1021/bc800118j

Source DB:  PubMed          Journal:  Bioconjug Chem        ISSN: 1043-1802            Impact factor:   4.774


  17 in total

1.  Synchronized domain-opening motion of GroEL is essential for communication between the two rings.

Authors:  K Shiseki; N Murai; F Motojima; T Hisabori; M Yoshida; H Taguchi
Journal:  J Biol Chem       Date:  2001-01-03       Impact factor: 5.157

2.  Single-molecule observation of protein-protein interactions in the chaperonin system.

Authors:  H Taguchi; T Ueno; H Tadakuma; M Yoshida; T Funatsu
Journal:  Nat Biotechnol       Date:  2001-09       Impact factor: 54.908

Review 3.  Application of fluorescence resonance energy transfer to the GroEL-GroES chaperonin reaction.

Authors:  H S Rye
Journal:  Methods       Date:  2001-07       Impact factor: 3.608

4.  Nucleotide binding to the chaperonin GroEL: non-cooperative binding of ATP analogs and ADP, and cooperative effect of ATP.

Authors:  T Inobe; T Makio; E Takasu-Ishikawa; T P Terada; K Kuwajima
Journal:  Biochim Biophys Acta       Date:  2001-02-09

5.  Measurement of submicrosecond intramolecular contact formation in peptides at the single-molecule level.

Authors:  Hannes Neuweiler; Andreas Schulz; Martin Böhmer; Jörg Enderlein; Markus Sauer
Journal:  J Am Chem Soc       Date:  2003-05-07       Impact factor: 15.419

Review 6.  Structural biology of cellular machines.

Authors:  Wah Chiu; Matthew L Baker; Steven C Almo
Journal:  Trends Cell Biol       Date:  2006-02-03       Impact factor: 20.808

7.  The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex.

Authors:  Z Xu; A L Horwich; P B Sigler
Journal:  Nature       Date:  1997-08-21       Impact factor: 49.962

8.  Nested cooperativity in the ATPase activity of the oligomeric chaperonin GroEL.

Authors:  O Yifrach; A Horovitz
Journal:  Biochemistry       Date:  1995-04-25       Impact factor: 3.162

9.  The crystal structure of the bacterial chaperonin GroEL at 2.8 A.

Authors:  K Braig; Z Otwinowski; R Hegde; D C Boisvert; A Joachimiak; A L Horwich; P B Sigler
Journal:  Nature       Date:  1994-10-13       Impact factor: 49.962

10.  Inter- and intramolecular fluorescence quenching of organic dyes by tryptophan.

Authors:  Nicole Marmé; Jens-Peter Knemeyer; Markus Sauer; Jürgen Wolfrum
Journal:  Bioconjug Chem       Date:  2003 Nov-Dec       Impact factor: 4.774

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  5 in total

1.  Out-of-equilibrium conformational cycling of GroEL under saturating ATP concentrations.

Authors:  Gabriel A Frank; Mila Goomanovsky; Amit Davidi; Guy Ziv; Amnon Horovitz; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

2.  GroEL Allostery Illuminated by a Relationship between the Hill Coefficient and the MWC Model.

Authors:  Ranit Gruber; Tridib Mondal; Amnon Horovitz
Journal:  Biophys J       Date:  2019-10-22       Impact factor: 4.033

3.  The spatial structure of cell signaling systems.

Authors:  Ruth Nussinov
Journal:  Phys Biol       Date:  2013-08-02       Impact factor: 2.583

4.  Discovery of an auto-regulation mechanism for the maltose ABC transporter MalFGK2.

Authors:  Huan Bao; Franck Duong
Journal:  PLoS One       Date:  2012-04-17       Impact factor: 3.240

5.  Probing water density and dynamics in the chaperonin GroEL cavity.

Authors:  John M Franck; Miri Sokolovski; Naama Kessler; Erez Matalon; Michal Gordon-Grossman; Song-I Han; Daniella Goldfarb; Amnon Horovitz
Journal:  J Am Chem Soc       Date:  2014-06-20       Impact factor: 15.419

  5 in total

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