Literature DB >> 9573169

Oligoribonuclease is encoded by a highly conserved gene in the 3'-5' exonuclease superfamily.

X Zhang1, L Zhu, M P Deutscher.   

Abstract

Oligoribonuclease, a 3'-to-5' exoribonuclease specific for small oligoribonucleotides, was purified to homogeneity from extracts of Escherichia coli. The purified protein is an alpha2 dimer of 40 kDa. NH2-terminal sequence analysis of the protein identified the gene encoding oligoribonuclease as yjeR (o204a), a previously reported open reading frame located at 94 min on the E. coli chromosome. However, as a consequence of the sequence information, the translation start site of this open reading frame has been revised. Cloning of yjeR led to overexpression of oligoribonuclease activity, and interruption of the cloned gene with a kanamycin resistance cassette eliminated the overexpression. On the basis of these data, we propose that yjeR be renamed orn. Orthologs of oligoribonuclease are present in a wide range of organisms, extending up to humans.

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Year:  1998        PMID: 9573169      PMCID: PMC107236          DOI: 10.1128/JB.180.10.2779-2781.1998

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  10 in total

1.  A novel oligoribonuclease of Escherichia coli. II. Mechanism of action.

Authors:  A K Datta; K Niyogi
Journal:  J Biol Chem       Date:  1975-09-25       Impact factor: 5.157

2.  A novel oligoribonuclease of Escherichia coli. I. Isolation and properties.

Authors:  S K Niyogi; A K Datta
Journal:  J Biol Chem       Date:  1975-09-25       Impact factor: 5.157

Review 3.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

4.  The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library.

Authors:  Y Kohara; K Akiyama; K Isono
Journal:  Cell       Date:  1987-07-31       Impact factor: 41.582

5.  Oligoribonuclease is distinct from the other known exoribonucleases of Escherichia coli.

Authors:  D Yu; M P Deutscher
Journal:  J Bacteriol       Date:  1995-07       Impact factor: 3.490

Review 6.  Promiscuous exoribonucleases of Escherichia coli.

Authors:  M P Deutscher
Journal:  J Bacteriol       Date:  1993-08       Impact factor: 3.490

7.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

Review 8.  A conserved ancient domain joins the growing superfamily of 3'-5' exonucleases.

Authors:  E V Koonin
Journal:  Curr Biol       Date:  1997-10-01       Impact factor: 10.834

9.  Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis.

Authors:  M P Deutscher; N B Reuven
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-15       Impact factor: 11.205

10.  Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes.

Authors:  V Burland; G Plunkett; H J Sofia; D L Daniels; F R Blattner
Journal:  Nucleic Acids Res       Date:  1995-06-25       Impact factor: 16.971

  10 in total
  33 in total

Review 1.  Exoribonuclease superfamilies: structural analysis and phylogenetic distribution.

Authors:  Y Zuo; M P Deutscher
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

Review 2.  Emerging features of mRNA decay in bacteria.

Authors:  D A Steege
Journal:  RNA       Date:  2000-08       Impact factor: 4.942

3.  Oligoribonuclease Contributes to Tolerance to Aminoglycoside and β-Lactam Antibiotics by Regulating KatA in Pseudomonas aeruginosa.

Authors:  Bin Xia; Mei Li; Zhenyang Tian; Gukui Chen; Chang Liu; Yushan Xia; Yongxin Jin; Fang Bai; Zhihui Cheng; Shouguang Jin; Weihui Wu
Journal:  Antimicrob Agents Chemother       Date:  2019-05-24       Impact factor: 5.191

4.  Identification of an Escherichia coli pepA homolog and its involvement in suppression of the algB phenotype in mucoid Pseudomonas aeruginosa.

Authors:  S C Woolwine; D J Wozniak
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

Review 5.  Linkage map of Escherichia coli K-12, edition 10: the traditional map.

Authors:  M K Berlyn
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

Review 6.  RNA decay: a novel therapeutic target in bacteria.

Authors:  Tess M Eidem; Christelle M Roux; Paul M Dunman
Journal:  Wiley Interdiscip Rev RNA       Date:  2012-02-28       Impact factor: 9.957

7.  Oligoribonuclease is an essential component of the mRNA decay pathway.

Authors:  S Ghosh; M P Deutscher
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

8.  NanoRNAs prime transcription initiation in vivo.

Authors:  Seth R Goldman; Josh S Sharp; Irina O Vvedenskaya; Jonathan Livny; Simon L Dove; Bryce E Nickels
Journal:  Mol Cell       Date:  2011-06-24       Impact factor: 17.970

9.  Comprehensive analysis of the effects of Escherichia coli ORFs on protein translation reaction.

Authors:  Yasuaki Kazuta; Jiro Adachi; Tomoaki Matsuura; Naoaki Ono; Hirotada Mori; Tetsuya Yomo
Journal:  Mol Cell Proteomics       Date:  2008-05-02       Impact factor: 5.911

10.  Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.

Authors:  Ming Fang; Wencke-Maria Zeisberg; Ciaran Condon; Vasily Ogryzko; Antoine Danchin; Undine Mechold
Journal:  Nucleic Acids Res       Date:  2009-06-24       Impact factor: 16.971

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