Literature DB >> 10200269

Oligoribonuclease is an essential component of the mRNA decay pathway.

S Ghosh1, M P Deutscher.   

Abstract

mRNA decay in prokaryotic cells involves the action of both endo- and exoribonucleases. In Escherichia coli, degradation of RNA to the mononucleotide level was thought to depend on RNase II and polynucleotide phosphorylase. Here, we show that the enzyme oligoribonuclease is an essential part of this process as well. Thus, inactivation of the orn gene encoding oligoribonuclease leads to a cessation of cell growth. Moreover, although pulse-labeled RNA decays normally in orn mutant cells under nonpermissive conditions, a large fraction of the resulting products is small oligoribonucleotides rather than the mononucleotides generated in wild-type cells. The oligoribonucleotides that accumulate are 2-5 residues in length; longer molecules disappear during the decay process. These data indicate that oligoribonuclease is required to complete the degradation of mRNA to mononucleotides and that this process is required for cell viability. Inasmuch as close homologues of the orn gene are found in a wide range of eukaryotes, extending up to humans, these findings raise the possibility that oligoribonuclease also participates in mRNA degradation in these organisms.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10200269      PMCID: PMC16339          DOI: 10.1073/pnas.96.8.4372

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  A novel oligoribonuclease of Escherichia coli. II. Mechanism of action.

Authors:  A K Datta; K Niyogi
Journal:  J Biol Chem       Date:  1975-09-25       Impact factor: 5.157

2.  A novel oligoribonuclease of Escherichia coli. I. Isolation and properties.

Authors:  S K Niyogi; A K Datta
Journal:  J Biol Chem       Date:  1975-09-25       Impact factor: 5.157

3.  Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

Authors:  A J Carpousis; G Van Houwe; C Ehretsmann; H M Krisch
Journal:  Cell       Date:  1994-03-11       Impact factor: 41.582

4.  Maturation pathways for E. coli tRNA precursors: a random multienzyme process in vivo.

Authors:  Z Li; M P Deutscher
Journal:  Cell       Date:  1996-08-09       Impact factor: 41.582

5.  A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.

Authors:  M M Bradford
Journal:  Anal Biochem       Date:  1976-05-07       Impact factor: 3.365

6.  Oligoribonuclease is encoded by a highly conserved gene in the 3'-5' exonuclease superfamily.

Authors:  X Zhang; L Zhu; M P Deutscher
Journal:  J Bacteriol       Date:  1998-05       Impact factor: 3.490

7.  Incorporation of water oxygens into intracellular nucleotides and RNA. II. Predominantly hydrolytic RNA turnover in Escherichia coli.

Authors:  S G Chaney; P D Boyer
Journal:  J Mol Biol       Date:  1972-03-14       Impact factor: 5.469

Review 8.  Degradation of mRNA in eukaryotes.

Authors:  C A Beelman; R Parker
Journal:  Cell       Date:  1995-04-21       Impact factor: 41.582

9.  Polyphosphate kinase is a component of the Escherichia coli RNA degradosome.

Authors:  E Blum; B Py; A J Carpousis; C F Higgins
Journal:  Mol Microbiol       Date:  1997-10       Impact factor: 3.501

10.  Gene affecting longevity of messenger RNA: a mutant of Escherichia coli with altered mRNA stability.

Authors:  M Kuwano; M Ono; H Endo; K Hori; K Nakamura; Y Hirota; Y Ohnishi
Journal:  Mol Gen Genet       Date:  1977-09-09
View more
  66 in total

1.  Cleavage of poly(A) tails on the 3'-end of RNA by ribonuclease E of Escherichia coli.

Authors:  A P Walsh; M R Tock; M H Mallen; V R Kaberdin; A von Gabain; K J McDowall
Journal:  Nucleic Acids Res       Date:  2001-05-01       Impact factor: 16.971

2.  Roles of polyadenylation and nucleolytic cleavage in the filamentous phage mRNA processing and decay pathways in Escherichia coli.

Authors:  A F Goodrich; D A Steege
Journal:  RNA       Date:  1999-07       Impact factor: 4.942

Review 3.  Exoribonuclease superfamilies: structural analysis and phylogenetic distribution.

Authors:  Y Zuo; M P Deutscher
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

Review 4.  Emerging features of mRNA decay in bacteria.

Authors:  D A Steege
Journal:  RNA       Date:  2000-08       Impact factor: 4.942

Review 5.  mRNA decay in Escherichia coli comes of age.

Authors:  Sidney R Kushner
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

Review 6.  Processing endoribonucleases and mRNA degradation in bacteria.

Authors:  David Kennell
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

Review 7.  All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay.

Authors:  Joel G Belasco
Journal:  Nat Rev Mol Cell Biol       Date:  2010-06-03       Impact factor: 94.444

8.  RNase I Modulates Escherichia coli Motility, Metabolism, and Resistance.

Authors:  Yashasvika Duggal; Benjamin M Fontaine; Deanna M Dailey; Gang Ning; Emily E Weinert
Journal:  ACS Chem Biol       Date:  2020-07-02       Impact factor: 5.100

9.  Oligoribonuclease Contributes to Tolerance to Aminoglycoside and β-Lactam Antibiotics by Regulating KatA in Pseudomonas aeruginosa.

Authors:  Bin Xia; Mei Li; Zhenyang Tian; Gukui Chen; Chang Liu; Yushan Xia; Yongxin Jin; Fang Bai; Zhihui Cheng; Shouguang Jin; Weihui Wu
Journal:  Antimicrob Agents Chemother       Date:  2019-05-24       Impact factor: 5.191

10.  Exoribonuclease R in Mycoplasma genitalium can carry out both RNA processing and degradative functions and is sensitive to RNA ribose methylation.

Authors:  Maureen S Lalonde; Yuhong Zuo; Jianwei Zhang; Xin Gong; Shaohui Wu; Arun Malhotra; Zhongwei Li
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.