Literature DB >> 9533716

Electron tomography of ice-embedded prokaryotic cells.

R Grimm1, H Singh, R Rachel, D Typke, W Zillig, W Baumeister.   

Abstract

Whole cells of archaea were embedded in vitreous ice by plunge freezing and investigated by automated energy-filtered electron tomography at 120 kV. The embedded cells were between 300 and 750 nm thick, and their structures were reconstructed to a resolution of 20-40 nm from tilt series comprising 50-140 images. The dose was kept within tolerable limits. A resolution of 20 nm allowed visualization of the individual stalks of the S-layer of Pyrobaculum aerophilum cells, which had undergone partial lysis, in three dimensions. The attainable resolution for low-dose electron tomography under different experimental conditions was theoretically investigated in terms of the specimen thickness. To obtain 2-nm resolution at 120 kV (300 kV), the specimen must not be thicker than 100 nm (150 nm). For a resolution of 10 nm, the maximum thickness is 450 nm (700 nm). An accelerating voltage of 300 kV is advantageous, mainly for specimens thicker than 100 nm. Experimental investigations so far have resulted in a resolution that is worse by a factor of 2-5 as compared to theory.

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Year:  1998        PMID: 9533716      PMCID: PMC1302584          DOI: 10.1016/S0006-3495(98)74028-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  26 in total

1.  Automated microscopy for electron tomography.

Authors:  A J Koster; H Chen; J W Sedat; D A Agard
Journal:  Ultramicroscopy       Date:  1992-10       Impact factor: 2.689

Review 2.  Soft X-ray microscopes and their biological applications.

Authors:  J Kirz; C Jacobsen; M Howells
Journal:  Q Rev Biophys       Date:  1995-02       Impact factor: 5.318

3.  Determination of the inelastic mean free path in ice by examination of tilted vesicles and automated most probable loss imaging.

Authors:  R Grimm; D Typke; M Bärmann; W Baumeister
Journal:  Ultramicroscopy       Date:  1996-07       Impact factor: 2.689

4.  Optimal strategies for imaging thick biological specimens: exit wavefront reconstruction and energy-filtered imaging.

Authors:  K F Han; A J Gubbens; J W Sedat; D A Agard
Journal:  J Microsc       Date:  1996-08       Impact factor: 1.758

5.  Energy filtered electron tomography of ice-embedded actin and vesicles.

Authors:  R Grimm; M Bärmann; W Häckl; D Typke; E Sackmann; W Baumeister
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

Review 6.  Principles of organization in eubacterial and archaebacterial surface proteins.

Authors:  W Baumeister; I Wildhaber; B M Phipps
Journal:  Can J Microbiol       Date:  1989-01       Impact factor: 2.419

7.  An imaging filter for biological applications.

Authors:  O L Krivanek; S L Friedman; A J Gubbens; B Kraus
Journal:  Ultramicroscopy       Date:  1995-07       Impact factor: 2.689

8.  Pyrobaculum aerophilum sp. nov., a novel nitrate-reducing hyperthermophilic archaeum.

Authors:  P Völkl; R Huber; E Drobner; R Rachel; S Burggraf; A Trincone; K O Stetter
Journal:  Appl Environ Microbiol       Date:  1993-09       Impact factor: 4.792

9.  The cell envelope of the hyperthermophilic archaebacterium Pyrobaculum organotrphum consists of two regularly arrayed protein layers: three-dimensional structure of the outer layer.

Authors:  B M Phipps; R Huber; W Baumeister
Journal:  Mol Microbiol       Date:  1991-02       Impact factor: 3.501

10.  Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli.

Authors:  S B Zimmerman; S O Trach
Journal:  J Mol Biol       Date:  1991-12-05       Impact factor: 5.469

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  42 in total

1.  Toward detecting and identifying macromolecules in a cellular context: template matching applied to electron tomograms.

Authors:  J Bohm; A S Frangakis; R Hegerl; S Nickell; D Typke; W Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Electron tomography of frozen-hydrated isolated triad junctions.

Authors:  T Wagenknecht; C-E Hsieh; B K Rath; S Fleischer; M Marko
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

3.  Supramolecular non-amyloid intermediates in the early stages of α-synuclein aggregation.

Authors:  Jonathan A Fauerbach; Dmytro A Yushchenko; Sarah H Shahmoradian; Wah Chiu; Thomas M Jovin; Elizabeth A Jares-Erijman
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

4.  Biological imaging by soft x-ray diffraction microscopy.

Authors:  David Shapiro; Pierre Thibault; Tobias Beetz; Veit Elser; Malcolm Howells; Chris Jacobsen; Janos Kirz; Enju Lima; Huijie Miao; Aaron M Neiman; David Sayre
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-11       Impact factor: 11.205

5.  Cryo-electron tomography reveals the comparative three-dimensional architecture of Prochlorococcus, a globally important marine cyanobacterium.

Authors:  Claire S Ting; Chyongere Hsieh; Sesh Sundararaman; Carmen Mannella; Michael Marko
Journal:  J Bacteriol       Date:  2007-04-20       Impact factor: 3.490

Review 6.  Toward the structure of dynamic membrane-anchored actin networks: an approach using cryo-electron tomography.

Authors:  Günther Gerisch; Igor Weber
Journal:  Cell Adh Migr       Date:  2007-07-05       Impact factor: 3.405

Review 7.  Exploring photosynthesis by electron tomography.

Authors:  Martin F Hohmann-Marriott; Robert W Roberson
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

8.  Native cellular architecture of Treponema denticola revealed by cryo-electron tomography.

Authors:  Jacques Izard; Chyong-Ere Hsieh; Ronald J Limberger; Carmen A Mannella; Michael Marko
Journal:  J Struct Biol       Date:  2008-03-28       Impact factor: 2.867

9.  Structural organization of Weibel-Palade bodies revealed by cryo-EM of vitrified endothelial cells.

Authors:  John A Berriman; Sam Li; Lindsay J Hewlett; Sebastian Wasilewski; Fedir N Kiskin; Tom Carter; Matthew J Hannah; Peter B Rosenthal
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-29       Impact factor: 11.205

10.  Chromatin organization and radio resistance in the bacterium Gemmata obscuriglobus.

Authors:  Arnon Lieber; Andrew Leis; Ariel Kushmaro; Abraham Minsky; Ohad Medalia
Journal:  J Bacteriol       Date:  2008-12-12       Impact factor: 3.490

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