Literature DB >> 9520376

High-resolution restriction maps of bacterial artificial chromosomes constructed by optical mapping.

W Cai1, J Jing, B Irvin, L Ohler, E Rose, H Shizuya, U J Kim, M Simon, T Anantharaman, B Mishra, D C Schwartz.   

Abstract

Large insert clone libraries have been the primary resource used for the physical mapping of the human genome. Research directions in the genome community now are shifting direction from purely mapping to large-scale sequencing, which in turn, require new standards to be met by physical maps and large insert libraries. Bacterial artificial chromosome libraries offer enormous potential as the chosen substrate for both mapping and sequencing studies. Physical mapping, however, has come under some scrutiny as being "redundant" in the age of large-scale automated sequencing. We report the development and applications of nonelectrophoretic, optical approaches for high-resolution mapping of bacterial artificial chromosome that offer the potential to complement and thereby advance large-scale sequencing projects.

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Year:  1998        PMID: 9520376      PMCID: PMC19846          DOI: 10.1073/pnas.95.7.3390

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  A new strategy for genome sequencing.

Authors:  J C Venter; H O Smith; L Hood
Journal:  Nature       Date:  1996-05-30       Impact factor: 49.962

2.  Construction and characterization of a human bacterial artificial chromosome library.

Authors:  U J Kim; B W Birren; T Slepak; V Mancino; C Boysen; H L Kang; M I Simon; H Shizuya
Journal:  Genomics       Date:  1996-06-01       Impact factor: 5.736

3.  Construction and characterization of a bovine bacterial artificial chromosome library.

Authors:  L Cai; J F Taylor; R A Wing; D S Gallagher; S S Woo; S K Davis
Journal:  Genomics       Date:  1995-09-20       Impact factor: 5.736

4.  A bacterial artificial chromosome-based framework contig map of human chromosome 22q.

Authors:  U J Kim; H Shizuya; H L Kang; S S Choi; C L Garrett; L J Smink; B W Birren; J R Korenberg; I Dunham; M I Simon
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

5.  A YAC contig map of the human genome.

Authors:  I M Chumakov; P Rigault; I Le Gall; C Bellanné-Chantelot; A Billault; S Guillou; P Soularue; G Guasconi; E Poullier; I Gros
Journal:  Nature       Date:  1995-09-28       Impact factor: 49.962

6.  Optical mapping of lambda bacteriophage clones using restriction endonucleases.

Authors:  X Meng; K Benson; K Chada; E J Huff; D C Schwartz
Journal:  Nat Genet       Date:  1995-04       Impact factor: 38.330

7.  Ordered restriction endonuclease maps of yeast artificial chromosomes created by optical mapping on surfaces.

Authors:  W Cai; H Aburatani; V P Stanton; D E Housman; Y K Wang; D C Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  1995-05-23       Impact factor: 11.205

8.  Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping.

Authors:  D C Schwartz; X Li; L I Hernandez; S P Ramnarain; E J Huff; Y K Wang
Journal:  Science       Date:  1993-10-01       Impact factor: 47.728

9.  Framework for a physical map of the human 22q13 region using bacterial artificial chromosomes (BACs).

Authors:  H Schmitt; U J Kim; T Slepak; N Blin; M I Simon; H Shizuya
Journal:  Genomics       Date:  1996-04-01       Impact factor: 5.736

10.  Genomic sequence sampling: a strategy for high resolution sequence-based physical mapping of complex genomes.

Authors:  M W Smith; A L Holmsen; Y H Wei; M Peterson; G A Evans
Journal:  Nat Genet       Date:  1994-05       Impact factor: 38.330

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  23 in total

1.  Optical mapping of Plasmodium falciparum chromosome 2.

Authors:  J Jing; Z Lai; C Aston; J Lin; D J Carucci; M J Gardner; B Mishra; T S Anantharaman; H Tettelin; L M Cummings; S L Hoffman; J C Venter; D C Schwartz
Journal:  Genome Res       Date:  1999-02       Impact factor: 9.043

2.  Optical mapping of BAC clones from the human Y chromosome DAZ locus.

Authors:  J Giacalone; S Delobette; V Gibaja; L Ni; Y Skiadas; R Qi; J Edington; Z Lai; D Gebauer; H Zhao; T Anantharaman; B Mishra; L G Brown; R Saxena; D C Page; D C Schwartz
Journal:  Genome Res       Date:  2000-09       Impact factor: 9.043

3.  Probing protein-DNA interactions by unzipping a single DNA double helix.

Authors:  Steven J Koch; Alla Shundrovsky; Benjamin C Jantzen; Michelle D Wang
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

4.  Restriction mapping in nanofluidic devices.

Authors:  Robert Riehn; Manchun Lu; Yan-Mei Wang; Shuang Fang Lim; Edward C Cox; Robert H Austin
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-06       Impact factor: 11.205

5.  Transchip: single-molecule detection of transcriptional elongation complexes.

Authors:  Tian Wu; David C Schwartz
Journal:  Anal Biochem       Date:  2006-11-16       Impact factor: 3.365

6.  Mapping nonrecombining regions in barley using multicolor FISH.

Authors:  M Karafiátová; J Bartoš; D Kopecký; L Ma; K Sato; A Houben; N Stein; J Doležel
Journal:  Chromosome Res       Date:  2013-09-12       Impact factor: 5.239

7.  Automated high resolution optical mapping using arrayed, fluid-fixed DNA molecules.

Authors:  J Jing; J Reed; J Huang; X Hu; V Clarke; J Edington; D Housman; T S Anantharaman; E J Huff; B Mishra; B Porter; A Shenker; E Wolfson; C Hiort; R Kantor; C Aston; D C Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

Review 8.  The rise of single-molecule DNA biochemistry.

Authors:  A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-24       Impact factor: 11.205

9.  A microfabricated device for sizing and sorting DNA molecules.

Authors:  H P Chou; C Spence; A Scherer; S Quake
Journal:  Proc Natl Acad Sci U S A       Date:  1999-01-05       Impact factor: 11.205

10.  Genomic analysis of Acinetobacter baumannii A118 by comparison of optical maps: identification of structures related to its susceptibility phenotype.

Authors:  Maria Soledad Ramirez; Mark D Adams; Robert A Bonomo; Daniela Centrón; Marcelo E Tolmasky
Journal:  Antimicrob Agents Chemother       Date:  2011-01-31       Impact factor: 5.191

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