Literature DB >> 7761468

Ordered restriction endonuclease maps of yeast artificial chromosomes created by optical mapping on surfaces.

W Cai1, H Aburatani, V P Stanton, D E Housman, Y K Wang, D C Schwartz.   

Abstract

We have developed a surface mounting technology for the rapid construction of ordered restriction maps from individual DNA molecules. Optical restriction maps constructed from yeast artificial chromosome DNA molecules mounted on specially derivatized glass surfaces are accurate and reproducible, and the technology is amenable to automation. The mounting procedures described here should also be useful for fluorescence in situ hybridization studies. We believe these improvements to optical mapping will further stimulate the development of nonelectrophoretic approaches to genome analysis.

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Year:  1995        PMID： 7761468      PMCID： PMC41869          DOI： 10.1073/pnas.92.11.5164

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  13 in total

1.  Immobilization of enzymes to agar, agarose, and Sephadex supports.

Authors:  J Porath; R Axén
Journal:  Methods Enzymol       Date:  1976       Impact factor: 1.600

2.  Physical mapping of human chromosomes by repetitive sequence fingerprinting.

Authors:  R L Stallings; D C Torney; C E Hildebrand; J L Longmire; L L Deaven; J H Jett; N A Doggett; R K Moyzis
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

3.  Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents.

Authors:  H M Albertsen; H Abderrahim; H M Cann; J Dausset; D Le Paslier; D Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

4.  Conformational dynamics of individual DNA molecules during gel electrophoresis.

Authors:  D C Schwartz; M Koval
Journal:  Nature       Date:  1989-04-06       Impact factor: 49.962

5.  A first-generation physical map of the human genome.

Authors:  D Cohen; I Chumakov; J Weissenbach
Journal:  Nature       Date:  1993-12-16       Impact factor: 49.962

6.  A simple method for DNA restriction site mapping.

Authors:  H O Smith; M L Birnstiel
Journal:  Nucleic Acids Res       Date:  1976-09       Impact factor: 16.971

7.  Construction of artificial chromosomes in yeast.

Authors:  A W Murray; J W Szostak
Journal:  Nature       Date:  1983 Sep 15-21       Impact factor: 49.962

8.  Genomic sequencing.

Authors:  G M Church; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

9.  DNA condensation with polyamines I. Spectroscopic studies.

Authors:  L C Gosule; J A Schellman
Journal:  J Mol Biol       Date:  1978-05-25       Impact factor: 5.469

10.  Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis.

Authors:  D C Schwartz; C R Cantor
Journal:  Cell       Date:  1984-05       Impact factor: 41.582
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  28 in total

1.  Optical mapping of Plasmodium falciparum chromosome 2.

Authors:  J Jing; Z Lai; C Aston; J Lin; D J Carucci; M J Gardner; B Mishra; T S Anantharaman; H Tettelin; L M Cummings; S L Hoffman; J C Venter; D C Schwartz
Journal:  Genome Res       Date:  1999-02       Impact factor: 9.043

2.  Exploring both sequence detection and restriction endonuclease cleavage kinetics by recognition site via single-molecule microfluidic trapping.

Authors:  Weilin Xu; Susan J Muller
Journal:  Lab Chip       Date:  2010-11-12       Impact factor: 6.799

3.  Transchip: single-molecule detection of transcriptional elongation complexes.

Authors:  Tian Wu; David C Schwartz
Journal:  Anal Biochem       Date:  2006-11-16       Impact factor: 3.365

Review 4.  Overview of Next-Generation Sequencing Technologies.

Authors:  Barton E Slatko; Andrew F Gardner; Frederick M Ausubel
Journal:  Curr Protoc Mol Biol       Date:  2018-04

5.  Imaging and analysis of transcription on large, surface-mounted single template DNA molecules.

Authors:  Hua Yu; David C Schwartz
Journal:  Anal Biochem       Date:  2008-05-24       Impact factor: 3.365

6.  Automated high resolution optical mapping using arrayed, fluid-fixed DNA molecules.

Authors:  J Jing; J Reed; J Huang; X Hu; V Clarke; J Edington; D Housman; T S Anantharaman; E J Huff; B Mishra; B Porter; A Shenker; E Wolfson; C Hiort; R Kantor; C Aston; D C Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

7.  Scanning force microscopy of DNA molecules elongated by convective fluid flow in an evaporating droplet.

Authors:  W Wang; J Lin; D C Schwartz
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

8.  High-resolution restriction maps of bacterial artificial chromosomes constructed by optical mapping.

Authors:  W Cai; J Jing; B Irvin; L Ohler; E Rose; H Shizuya; U J Kim; M Simon; T Anantharaman; B Mishra; D C Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-31       Impact factor: 11.205

9.  Identification of seven new human MHC class I region genes around the HLA-F locus.

Authors:  W Fan; W Cai; S Parimoo; D C Schwarz; G G Lennon; S M Weissman
Journal:  Immunogenetics       Date:  1996       Impact factor: 2.846

10.  Toward single-molecule optical mapping of the epigenome.

Authors:  Michal Levy-Sakin; Assaf Grunwald; Soohong Kim; Natalie R Gassman; Anna Gottfried; Josh Antelman; Younggyu Kim; Sam O Ho; Robin Samuel; Xavier Michalet; Ron R Lin; Thomas Dertinger; Andrew S Kim; Sangyoon Chung; Ryan A Colyer; Elmar Weinhold; Shimon Weiss; Yuval Ebenstein
Journal:  ACS Nano       Date:  2013-12-20       Impact factor: 15.881
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