Literature DB >> 9515935

Cloning and sequencing of a form II ribulose-1,5-biphosphate carboxylase/oxygenase from the bacterial symbiont of the hydrothermal vent tubeworm Riftia pachyptila.

J J Robinson1, J L Stein, C M Cavanaugh.   

Abstract

The bacterial symbiont of the hydrothermal vent tubeworm fixes carbon via the Calvin-Benson cycle and has been shown previously to express a form II ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO). The gene cbbM, which encodes this enzyme, has been cloned and sequenced. The gene has the highest identity with the cbbM gene from Rhodospirillum rubrum, and analysis of the inferred amino acid sequence reveals that all active-site residues are conserved. This is the first form II RubisCO cloned and sequenced from a chemoautotrophic symbiont and from a deep-sea organism.

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Year:  1998        PMID: 9515935      PMCID: PMC107066     

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  13 in total

Review 1.  RUBISCO: structure and mechanism.

Authors:  G Schneider; Y Lindqvist; C I Brändén
Journal:  Annu Rev Biophys Biomol Struct       Date:  1992

2.  Hydrothermal Vent Clam and Tube Worm 13C/12C: Further Evidence of Nonphotosynthetic Food Sources.

Authors:  G H Rau
Journal:  Science       Date:  1981-07-17       Impact factor: 47.728

3.  Stable carbon isotopic evidence for carbon limitation in hydrothermal vent vestimentiferans.

Authors:  C R Fisher; M C Kennicutt; J M Brooks
Journal:  Science       Date:  1990-03-02       Impact factor: 47.728

4.  Rubisco in marine symbiotic dinoflagellates: form II enzymes in eukaryotic oxygenic phototrophs encoded by a nuclear multigene family.

Authors:  R Rowan; S M Whitney; A Fowler; D Yellowlees
Journal:  Plant Cell       Date:  1996-03       Impact factor: 11.277

5.  Isolation of intact high-molecular-weight DNA by using guanidine isothiocyanate.

Authors:  J A Lippke; M N Strzempko; F F Raia; S L Simon; C K French
Journal:  Appl Environ Microbiol       Date:  1987-10       Impact factor: 4.792

6.  A nuclear-encoded form II RuBisCO in dinoflagellates.

Authors:  D Morse; P Salois; P Markovic; J W Hastings
Journal:  Science       Date:  1995-06-16       Impact factor: 47.728

Review 7.  Chemical and genetic probes of the active site of D-ribulose-1,5-bisphosphate carboxylase/oxygenase: a retrospective based on the three-dimensional structure.

Authors:  F C Hartman; M R Harpel
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1993

8.  Sulfur-oxidizing symbionts have not co-evolved with their hydrothermal vent tube worm hosts: an RFLP analysis.

Authors:  B E Laue; D C Nelson
Journal:  Mol Mar Biol Biotechnol       Date:  1997-09

9.  Photosynthetic Fractionation of the Stable Isotopes of Oxygen and Carbon.

Authors:  R. D. Guy; M. L. Fogel; J. A. Berry
Journal:  Plant Physiol       Date:  1993-01       Impact factor: 8.340

10.  Carbon isotope effect on carboxylation of ribulose bisphosphate catalyzed by ribulosebisphosphate carboxylase from Rhodospirillum rubrum.

Authors:  C A Roeske; M H O'Leary
Journal:  Biochemistry       Date:  1985-03-26       Impact factor: 3.162

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  12 in total

1.  Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase.

Authors:  K Nanba; G M King; K Dunfield
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

2.  Abundance of reverse tricarboxylic acid cycle genes in free-living microorganisms at deep-sea hydrothermal vents.

Authors:  Barbara J Campbell; S Craig Cary
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

Review 3.  Metagenomics: application of genomics to uncultured microorganisms.

Authors:  Jo Handelsman
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

4.  Diversity and structure of bacterial chemolithotrophic communities in pine forest and agroecosystem soils.

Authors:  J Tolli; G M King
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

5.  Molecular characterization of a deep-sea methanotrophic mussel symbiont that carries a RuBisCO gene.

Authors:  Hosam Easa Elsaied; Ryo Kaneko; Takeshi Naganuma
Journal:  Mar Biotechnol (NY)       Date:  2006-06-12       Impact factor: 3.619

6.  Composition of archaeal, bacterial, and eukaryal RuBisCO genotypes in three Western Pacific arc hydrothermal vent systems.

Authors:  Hosam Easa Elsaied; Hiroyuki Kimura; Takeshi Naganuma
Journal:  Extremophiles       Date:  2006-10-06       Impact factor: 2.395

7.  Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation.

Authors:  Kennan Kellaris Salinero; Keith Keller; William S Feil; Helene Feil; Stephan Trong; Genevieve Di Bartolo; Alla Lapidus
Journal:  BMC Genomics       Date:  2009-08-03       Impact factor: 3.969

8.  Insertion mutation of the form I cbbL gene encoding ribulose bisphosphate carboxylase/oxygenase (RuBisCO) in Thiobacillus neapolitanus results in expression of form II RuBisCO, loss of carboxysomes, and an increased CO2 requirement for growth.

Authors:  S H Baker; S Jin; H C Aldrich; G T Howard; J M Shively
Journal:  J Bacteriol       Date:  1998-08       Impact factor: 3.490

9.  Distribution of RuBisCO genotypes along a redox gradient in Mono Lake, California.

Authors:  Bruno J Giri; Nasreen Bano; James T Hollibaugh
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792

10.  Evidence of chemolithoautotrophy in the bacterial community associated with Alvinella pompejana, a hydrothermal vent polychaete.

Authors:  Barbara J Campbell; Jeffrey L Stein; S Craig Cary
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

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