Literature DB >> 15184142

Distribution of RuBisCO genotypes along a redox gradient in Mono Lake, California.

Bruno J Giri1, Nasreen Bano, James T Hollibaugh.   

Abstract

Partial sequences of ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) (EC 4.1.1.39) genes were retrieved from samples taken along a redox gradient in alkaline, hypersaline Mono Lake, Calif. The form I gene (cbbL) was found in all samples, whereas form II (cbbM) was not retrieved from any of the samples. None of the RuBisCO sequences we obtained were closely related (nucleotide similarity, <90%) to sequences in the database. Some could be attributed to organisms isolated from the lake (Cyanobium) or appearing in enrichment cultures. Most (52%) of the sequences fell into in one clade, containing sequences that were identical to sequences retrieved from an enrichment culture grown with nitrate and sulfide, and another clade contained sequences identical to those retrieved from an arsenate-reducing, sulfide-oxidizing enrichment.

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Year:  2004        PMID: 15184142      PMCID: PMC427752          DOI: 10.1128/AEM.70.6.3443-3448.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  15 in total

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2.  Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase.

Authors:  K Nanba; G M King; K Dunfield
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

3.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
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Review 4.  Molecular and cellular regulation of autotrophic carbon dioxide fixation in microorganisms.

Authors:  F R Tabita
Journal:  Microbiol Rev       Date:  1988-06

5.  Purification of form L2 RubisCO from a marine obligately autotrophic hydrogen-oxidizing bacterium, Hydrogenovibrio marinus strain MH-110.

Authors:  S Y Chung; T Yaguchi; H Nishihara; Y Igarashi; T Kodama
Journal:  FEMS Microbiol Lett       Date:  1993-05-01       Impact factor: 2.742

6.  Phylogenetic diversity of ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes from deep-sea microorganisms.

Authors:  H Elsaied; T Naganuma
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

7.  Depth distribution of microbial diversity in Mono Lake, a meromictic soda lake in California.

Authors:  Shaheen B Humayoun; Nasreen Bano; James T Hollibaugh
Journal:  Appl Environ Microbiol       Date:  2003-02       Impact factor: 4.792

8.  Anaerobic oxidation of arsenite in Mono Lake water and by a facultative, arsenite-oxidizing chemoautotroph, strain MLHE-1.

Authors:  Ronald S Oremland; Shelley E Hoeft; Joanne M Santini; Nasreen Bano; Ryan A Hollibaugh; James T Hollibaugh
Journal:  Appl Environ Microbiol       Date:  2002-10       Impact factor: 4.792

9.  Cloning and expression of the D-ribulose-1,5-bisphosphate carboxylase/oxygenase form II gene from Thiobacillus intermedius in Escherichia coli.

Authors:  M T Stoner; J M Shively
Journal:  FEMS Microbiol Lett       Date:  1993-03-01       Impact factor: 2.742

10.  Sequence and expression of genes encoding the large and small subunits of ribulose 1,5-bisphosphate carboxylase/oxygenase from Chromatium vinosum.

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Journal:  Gene       Date:  1991-01-02       Impact factor: 3.688

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  19 in total

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Journal:  Extremophiles       Date:  2012-01-03       Impact factor: 2.395

2.  Diversity and expression of RubisCO genes in a perennially ice-covered Antarctic lake during the polar night transition.

Authors:  Weidong Kong; David C Ream; John C Priscu; Rachael M Morgan-Kiss
Journal:  Appl Environ Microbiol       Date:  2012-04-06       Impact factor: 4.792

3.  Diversity and structure of bacterial chemolithotrophic communities in pine forest and agroecosystem soils.

Authors:  J Tolli; G M King
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

4.  Metagenomic assessment of a sulfur-oxidizing enrichment culture derived from marine sediment.

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Review 5.  Microbiology of Lonar Lake and other soda lakes.

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Journal:  ISME J       Date:  2012-11-22       Impact factor: 10.302

6.  The CO2-concentrating mechanism of Synechococcus WH5701 is composed of native and horizontally-acquired components.

Authors:  Benjamin D Rae; Britta Förster; Murray R Badger; G Dean Price
Journal:  Photosynth Res       Date:  2011-03-08       Impact factor: 3.573

7.  Metabolic versatility of haloalkaliphilic bacteria from soda lakes belonging to the Alkalispirillum-Alkalilimnicola group.

Authors:  Dimitry Y Sorokin; Tatjana N Zhilina; Anatoly M Lysenko; Tatjana P Tourova; Elizaveta M Spiridonova
Journal:  Extremophiles       Date:  2006-02-21       Impact factor: 2.395

8.  Sulfide oxidation coupled to arsenate reduction by a diverse microbial community in a soda lake.

Authors:  James T Hollibaugh; Charles Budinoff; Ryan A Hollibaugh; Briana Ransom; Nasreen Bano
Journal:  Appl Environ Microbiol       Date:  2006-03       Impact factor: 4.792

9.  The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes.

Authors:  Dimitry Y Sorokin; J Gijs Kuenen; Gerard Muyzer
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10.  Comparative molecular analysis of chemolithoautotrophic bacterial diversity and community structure from coastal saline soils, Gujarat, India.

Authors:  Basit Yousuf; Payal Sanadhya; Jitendra Keshri; Bhavanath Jha
Journal:  BMC Microbiol       Date:  2012-07-26       Impact factor: 3.605

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