Literature DB >> 9501170

The crystal structure of Pyrococcus furiosus ornithine carbamoyltransferase reveals a key role for oligomerization in enzyme stability at extremely high temperatures.

V Villeret1, B Clantin, C Tricot, C Legrain, M Roovers, V Stalon, N Glansdorff, J Van Beeumen.   

Abstract

The Pyrococcus furiosus (PF) ornithine carbamoyltransferase (OTCase; EC 2.1.3.3) is an extremely heat-stable enzyme that maintains about 50% of its activity after heat treatment for 60 min at 100 degrees C. To understand the molecular basis of thermostability of this enzyme, we have determined its three-dimensional structure at a resolution of 2.7 A and compared it with the previously reported structures of OTCases isolated from mesophilic bacteria. Most OTCases investigated up to now are homotrimeric and devoid of allosteric properties. A striking exception is the catabolic OTCase from Pseudomonas aeruginosa, which is allosterically regulated and built up of four trimers disposed in a tetrahedral manner, an architecture that actually underlies the allostery of the enzyme. We now report that the thermostable PF OTCase (420 kDa) presents the same 23-point group symmetry. The enzyme displays Michaelis-Menten kinetics. A detailed comparison of the two enzymes suggests that, in OTCases, not only allostery but also thermophily was achieved through oligomerization of a trimer as a common catalytic motif. Thermal stabilization of the PF OTCase dodecamer is mainly the result of hydrophobic interfaces between trimers, at positions where allosteric binding sites have been identified in the allosteric enzyme. The present crystallographic analysis of PF OTCase provides a structural illustration that oligomerization can play a major role in extreme thermal stabilization.

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Year:  1998        PMID: 9501170      PMCID: PMC19649          DOI: 10.1073/pnas.95.6.2801

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

2.  Molecular size and symmetry of Pseudomonas aeruginosa catabolic ornithine carbamoyltransferase. An X-ray crystallography analysis.

Authors:  S Marcq; A Diaz-Ruano; P Charlier; O Dideberg; C Tricot; A Piérard; V Stalon
Journal:  J Mol Biol       Date:  1991-07-05       Impact factor: 5.469

3.  2.0 A structure of indole-3-glycerol phosphate synthase from the hyperthermophile Sulfolobus solfataricus: possible determinants of protein stability.

Authors:  M Hennig; B Darimont; R Sterner; K Kirschner; J N Jansonius
Journal:  Structure       Date:  1995-12-15       Impact factor: 5.006

Review 4.  The denaturation and degradation of stable enzymes at high temperatures.

Authors:  R M Daniel; M Dines; H H Petach
Journal:  Biochem J       Date:  1996-07-01       Impact factor: 3.857

5.  Crystal structure at 2.8 A resolution of anabolic ornithine transcarbamylase from Escherichia coli.

Authors:  L Jin; B A Seaton; J F Head
Journal:  Nat Struct Biol       Date:  1997-08

Review 6.  Compartmental and regulatory mechanisms in the arginine pathways of Neurospora crassa and Saccharomyces cerevisiae.

Authors:  R H Davis
Journal:  Microbiol Rev       Date:  1986-09

7.  Thermal stability and protein structure.

Authors:  P Argos; M G Rossman; U M Grau; H Zuber; G Frank; J D Tratschin
Journal:  Biochemistry       Date:  1979-12-11       Impact factor: 3.162

Review 8.  Aspartate transcarbamylase from Escherichia coli: activity and regulation.

Authors:  W N Lipscomb
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1994

9.  Biochemical characterisation of ornithine carbamoyltransferase from Pyrococcus furiosus.

Authors:  C Legrain; V Villeret; M Roovers; D Gigot; O Dideberg; A Piérard; N Glansdorff
Journal:  Eur J Biochem       Date:  1997-08-01

10.  Determinants of protein thermostability observed in the 1.9-A crystal structure of malate dehydrogenase from the thermophilic bacterium Thermus flavus.

Authors:  C A Kelly; M Nishiyama; Y Ohnishi; T Beppu; J J Birktoft
Journal:  Biochemistry       Date:  1993-04-20       Impact factor: 3.162

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  36 in total

1.  Experimental evolution of enzyme temperature activity profile: selection in vivo and characterization of low-temperature-adapted mutants of Pyrococcus furiosus ornithine carbamoyltransferase.

Authors:  M Roovers; R Sanchez; C Legrain; N Glansdorff
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

2.  Intrinsic contributions of polar amino acid residues toward thermal stability of an ABC-ATPase of mesophilic origin.

Authors:  Jyoti Sarin; Gajendra P S Raghava; Pradip K Chakraborti
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

3.  New experimental approaches for investigating interactions between Pyrococcus furiosus carbamate kinase and carbamoyltransferases, enzymes involved in the channeling of thermolabile carbamoyl phosphate.

Authors:  Jan Massant; Nicolas Glansdorff
Journal:  Archaea       Date:  2005-12       Impact factor: 3.273

4.  Oligomerization of Sulfolobus solfataricus signature amidase is promoted by acidic pH and high temperature.

Authors:  Anna Scotto D'Abusco; Rita Casadio; Gianluca Tasco; Laura Giangiacomo; Anna Giartosio; Valentina Calamia; Stefania Di Marco; Roberta Chiaraluce; Valerio Consalvi; Roberto Scandurra; Laura Politi
Journal:  Archaea       Date:  2005-12       Impact factor: 3.273

5.  Studies of yeast oligosaccharyl transferase subunits using the split-ubiquitin system: topological features and in vivo interactions.

Authors:  Aixin Yan; Elain Wu; William J Lennarz
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-10       Impact factor: 11.205

6.  Overexpression, purification, crystallization and preliminary structural studies of catabolic ornithine transcarbamylase from Lactobacillus hilgardii.

Authors:  Blanca de Las Rivas; Héctor Rodríguez; Iván Angulo; Rosario Muñoz; José M Mancheño
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-06-11

7.  Heterologous expression and characterization of an alcohol dehydrogenase from the archeon Thermoplasma acidophilum.

Authors:  Erika Nahomy Marino-Marmolejo; Antonio De León-Rodríguez; Ana Paulina Barba de la Rosa; Leticia Santos
Journal:  Mol Biotechnol       Date:  2008-12-05       Impact factor: 2.695

8.  The folding and assembly of the dodecameric type II dehydroquinases.

Authors:  N C Price; D J Boam; S M Kelly; D Duncan; T Krell; D G Gourley; J R Coggins; R Virden; A R Hawkins
Journal:  Biochem J       Date:  1999-02-15       Impact factor: 3.857

9.  Metabolic enzymes from psychrophilic bacteria: challenge of adaptation to low temperatures in ornithine carbamoyltransferase from Moritella abyssi.

Authors:  Ying Xu; Georges Feller; Charles Gerday; Nicolas Glansdorff
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

10.  Contributions of the C-terminal helix to the structural stability of a hyperthermophilic Fe-superoxide dismutase (TcSOD).

Authors:  Sha Wang; Yong-Bin Yan; Zhi-Yang Dong
Journal:  Int J Mol Sci       Date:  2009-12-23       Impact factor: 6.208

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