Literature DB >> 9482827

Importance of anchor genomes for any plant genome project.

J Messing1, V Llaca.   

Abstract

Progress in agricultural and environmental technologies is hampered by a slower rate of gene discovery in plants than animals. The vast pool of genes in plants, however, will be an important resource for insertion of genes, via biotechnological procedures, into an array of plants, generating unique germ plasms not achievable by conventional breeding. It just became clear that genomes of grasses have evolved in a manner analogous to Lego blocks. Large chromosome segments have been reshuffled and stuffer pieces added between genes. Although some genomes have become very large, the genome with the fewest stuffer pieces, the rice genome, is the Rosetta Stone of all the bigger grass genomes. This means that sequencing the rice genome as anchor genome of the grasses will provide instantaneous access to the same genes in the same relative physical position in other grasses (e.g., corn and wheat), without the need to sequence each of these genomes independently. (i) The sequencing of the entire genome of rice as anchor genome for the grasses will accelerate plant gene discovery in many important crops (e.g., corn, wheat, and rice) by several orders of magnitudes and reduce research and development costs for government and industry at a faster pace. (ii) Costs for sequencing entire genomes have come down significantly. Because of its size, rice is only 12% of the human or the corn genome, and technology improvements by the human genome project are completely transferable, translating in another 50% reduction of the costs. (iii) The physical mapping of the rice genome by a group of Japanese researchers provides a jump start for sequencing the genome and forming an international consortium. Otherwise, other countries would do it alone and own proprietary positions.

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Mesh:

Year:  1998        PMID: 9482827      PMCID: PMC33835          DOI: 10.1073/pnas.95.5.2017

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  6 in total

1.  Nested retrotransposons in the intergenic regions of the maize genome.

Authors:  P SanMiguel; A Tikhonov; Y K Jin; N Motchoulskaia; D Zakharov; A Melake-Berhan; P S Springer; K J Edwards; M Lee; Z Avramova; J L Bennetzen
Journal:  Science       Date:  1996-11-01       Impact factor: 47.728

2.  The N gene of tobacco confers resistance to tobacco mosaic virus in transgenic tomato.

Authors:  S Whitham; S McCormick; B Baker
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-06       Impact factor: 11.205

Review 3.  Cereal genome evolution. Grasses, line up and form a circle.

Authors:  G Moore; K M Devos; Z Wang; M D Gale
Journal:  Curr Biol       Date:  1995-07-01       Impact factor: 10.834

4.  Zeon-1, a member of a new maize retrotransposon family.

Authors:  W Hu; O P Das; J Messing
Journal:  Mol Gen Genet       Date:  1995-08-30

5.  RFLP mapping of the maize dzr1 locus, which regulates methionine-rich 10 kDa zein accumulation.

Authors:  S Chaudhuri; J Messing
Journal:  Mol Gen Genet       Date:  1995-03-20

6.  Comparative genome mapping of Sorghum and maize.

Authors:  R Whitkus; J Doebley; M Lee
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

  6 in total
  11 in total

1.  Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes.

Authors:  M Rossberg; K Theres; A Acarkan; R Herrero; T Schmitt; K Schumacher; G Schmitz; R Schmidt
Journal:  Plant Cell       Date:  2001-04       Impact factor: 11.277

Review 2.  Through a genome, darkly: comparative analysis of plant chromosomal DNA.

Authors:  Graham J King
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

Review 3.  Plant genome evolution: lessons from comparative genomics at the DNA level.

Authors:  Renate Schmidt
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

4.  Synergy of two reference genomes for the grass family.

Authors:  Joachim Messing
Journal:  Plant Physiol       Date:  2009-01       Impact factor: 8.340

5.  The colinearity of the Sh2/A1 orthologous region in rice, sorghum and maize is interrupted and accompanied by genome expansion in the triticeae.

Authors:  Wanlong Li; Bikram S Gill
Journal:  Genetics       Date:  2002-03       Impact factor: 4.562

6.  Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation.

Authors:  X Draye; Y R Lin; X Y Qian; J E Bowers; G B Burow; P L Morrell; D G Peterson; G G Presting; S X Ren; R A Wing; A H Paterson
Journal:  Plant Physiol       Date:  2001-03       Impact factor: 8.340

7.  An SSR- and AFLP-based genetic linkage map of tall fescue (Festuca arundinacea Schreb.).

Authors:  Malay C Saha; Rouf Mian; John C Zwonitzer; Konstantin Chekhovskiy; Andrew A Hopkins
Journal:  Theor Appl Genet       Date:  2004-11-19       Impact factor: 5.699

8.  Utility and distribution of conserved noncoding sequences in the grasses.

Authors:  Nicholas J Kaplinsky; David M Braun; Jon Penterman; Stephen A Goff; Michael Freeling
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

9.  Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives.

Authors:  Chao Wang; Xue Shi; Lin Liu; Haiyan Li; Jetty S S Ammiraju; David A Kudrna; Wentao Xiong; Hao Wang; Zhaozhao Dai; Yonglian Zheng; Jinsheng Lai; Weiwei Jin; Joachim Messing; Jeffrey L Bennetzen; Rod A Wing; Meizhong Luo
Journal:  Genetics       Date:  2013-09-13       Impact factor: 4.562

10.  Analysis of EST sequences suggests recent origin of allotetraploid colonial and creeping bentgrasses.

Authors:  David Rotter; Arvind K Bharti; Huaijun Michael Li; Chongyuan Luo; Stacy A Bonos; Suleiman Bughrara; Geunhwa Jung; Joachim Messing; William A Meyer; Stephen Rudd; Scott E Warnke; Faith C Belanger
Journal:  Mol Genet Genomics       Date:  2007-05-12       Impact factor: 2.980

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