Literature DB >> 17497174

Analysis of EST sequences suggests recent origin of allotetraploid colonial and creeping bentgrasses.

David Rotter1, Arvind K Bharti, Huaijun Michael Li, Chongyuan Luo, Stacy A Bonos, Suleiman Bughrara, Geunhwa Jung, Joachim Messing, William A Meyer, Stephen Rudd, Scott E Warnke, Faith C Belanger.   

Abstract

Advances in plant genomics have permitted the analysis of several members of the grass family, including the major domesticated species, and provided new insights into the evolution of the major crops on earth. Two members, colonial bentgrass (Agrostis capillaris L.) and creeping bentgrass (A. stolonifera L.) have only recently been domesticated and provide an interesting case of polyploidy and comparison to crops that have undergone human selection for thousands of years. As an initial step of characterizing these genomes, we have sampled roughly 10% of their gene content, thereby also serving as a starting point for the construction of their physical and genetic maps. Sampling mRNA from plants subjected to environmental stress showed a remarkable increase in transcription of transposable elements. Both colonial and creeping bentgrass are allotetraploids and are considered to have one genome in common, designated the A2 genome. Analysis of conserved genes present among the ESTs suggests the colonial and creeping bentgrass A2 genomes diverged from a common ancestor approximately 2.2 million years ago (MYA), thereby providing an enhanced evolutionary zoom in respect to the origin of maize, which formed 4.8 MYA, and tetraploid wheat, which formed only 0.5 MYA and is the progenitor of domesticated hexaploid wheat.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17497174     DOI: 10.1007/s00438-007-0240-2

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   2.980


  38 in total

Review 1.  Transposable element contributions to plant gene and genome evolution.

Authors:  J L Bennetzen
Journal:  Plant Mol Biol       Date:  2000-01       Impact factor: 4.076

Review 2.  Plant transposable elements: where genetics meets genomics.

Authors:  Cédric Feschotte; Ning Jiang; Susan R Wessler
Journal:  Nat Rev Genet       Date:  2002-05       Impact factor: 53.242

3.  Rate variation among nuclear genes and the age of polyploidy in Gossypium.

Authors:  David S Senchina; Ines Alvarez; Richard C Cronn; Bao Liu; Junkang Rong; Richard D Noyes; Andrew H Paterson; Rod A Wing; Thea A Wilkins; Jonathan F Wendel
Journal:  Mol Biol Evol       Date:  2003-04-02       Impact factor: 16.240

4.  Linkage map construction in allotetraploid creeping bentgrass (Agrostis stolonifera L.).

Authors:  N Chakraborty; J Bae; S Warnke; T Chang; G Jung
Journal:  Theor Appl Genet       Date:  2005-06-25       Impact factor: 5.699

5.  Relationships of cereal crops and other grasses.

Authors:  E A Kellogg
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

6.  Insertion-deletion polymorphisms in 3' regions of maize genes occur frequently and can be used as highly informative genetic markers.

Authors:  Dinakar Bhattramakki; Maureen Dolan; Mike Hanafey; Robin Wineland; Dave Vaske; James C Register; Scott V Tingey; Antoni Rafalski
Journal:  Plant Mol Biol       Date:  2002 Mar-Apr       Impact factor: 4.076

7.  Structure and architecture of the maize genome.

Authors:  Georg Haberer; Sarah Young; Arvind K Bharti; Heidrun Gundlach; Christina Raymond; Galina Fuks; Ed Butler; Rod A Wing; Steve Rounsley; Bruce Birren; Chad Nusbaum; Klaus F X Mayer; Joachim Messing
Journal:  Plant Physiol       Date:  2005-12       Impact factor: 8.340

8.  Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat.

Authors:  Simon Griffiths; Rebecca Sharp; Tracie N Foote; Isabelle Bertin; Michael Wanous; Steve Reader; Isabelle Colas; Graham Moore
Journal:  Nature       Date:  2006-02-09       Impact factor: 49.962

9.  Mosaic organization of orthologous sequences in grass genomes.

Authors:  Rentao Song; Victor Llaca; Joachim Messing
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

10.  Retrotranspositions in orthologous regions of closely related grass species.

Authors:  Chunguang Du; Zuzana Swigonová; Joachim Messing
Journal:  BMC Evol Biol       Date:  2006-08-16       Impact factor: 3.260

View more
  7 in total

1.  Generation, functional analysis and utility of Citrus grandis EST from a flower-derived cDNA library.

Authors:  Manosh Kumar Biswas; Lijun Chai; Xu Qiang; Xiuxin Deng
Journal:  Mol Biol Rep       Date:  2012-04-05       Impact factor: 2.316

2.  Molecular phylogenetics of cool-season grasses in the subtribes Agrostidinae, Anthoxanthinae, Aveninae, Brizinae, Calothecinae, Koeleriinae and Phalaridinae (Poaceae, Pooideae, Poeae, Poeae chloroplast group 1).

Authors:  Jeffery M Saarela; Roger D Bull; Michel J Paradis; Sharon N Ebata; Robert J Soreng; Beata Paszko
Journal:  PhytoKeys       Date:  2017-10-09       Impact factor: 1.635

3.  RNA-Seq analysis of the Sclerotinia homoeocarpa--creeping bentgrass pathosystem.

Authors:  Angela M Orshinsky; Jinnan Hu; Stephen O Opiyo; Venu Reddyvari-Channarayappa; Thomas K Mitchell; Michael J Boehm
Journal:  PLoS One       Date:  2012-08-08       Impact factor: 3.240

4.  Development of a genome-wide multiple duplex-SSR protocol and its applications for the identification of selfed progeny in switchgrass.

Authors:  Linglong Liu; Yanqi Wu
Journal:  BMC Genomics       Date:  2012-10-03       Impact factor: 3.969

5.  Transcriptome Analysis of ESTs from a Chaetognath Reveals a Deep-Branching Clade of Retrovirus-Like Retrotransposons.

Authors:  Roxane M Barthélémy; Jean-Paul Casanova; Eric Faure
Journal:  Open Virol J       Date:  2008-05-07

6.  Root Antioxidant Mechanisms in Relation to Root Thermotolerance in Perennial Grass Species Contrasting in Heat Tolerance.

Authors:  Yi Xu; Patrick Burgess; Bingru Huang
Journal:  PLoS One       Date:  2015-09-18       Impact factor: 3.240

7.  Comparative genome analysis between Agrostis stolonifera and members of the Pooideae subfamily, including Brachypodium distachyon.

Authors:  Loreto Araneda; Sung-Chur Sim; Jin-Joo Bae; Nanda Chakraborty; Joe Curley; Taehyun Chang; Maiko Inoue; Scott Warnke; Geunhwa Jung
Journal:  PLoS One       Date:  2013-11-11       Impact factor: 3.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.