Literature DB >> 9431935

Enterobacterial repetitive intergenic consensus sequences as molecular targets for typing of Mycobacterium tuberculosis strains.

L A Sechi1, S Zanetti, I Dupré, G Delogu, G Fadda.   

Abstract

The presence of enterobacterial repetitive intergenic consensus (ERIC) sequences was demonstrated for the first time in the genome of Mycobacterium tuberculosis; these sequences have been found in transcribed regions of the chromosomes of gram-negative bacteria. In this study genetic diversity among clinical isolates of M. tuberculosis was determined by PCR with ERIC primers (ERIC-PCR). The study isolates comprised 71 clinical isolates collected from Sardinia, Italy. ERIC-PCR was able to identify 59 distinct profiles. The results obtained were compared with IS6110 and PCR-GTG fingerprinting. We found that the level of differentiation obtained by ERIC-PCR is greater than that obtained by IS6110 fingerprinting and comparable to that obtained by PCR-GTG. This method of fingerprinting is rapid and sensitive and can be applied to the study of the epidemiology of M. tuberculosis infections, especially when IS6110 fingerprinting is not of any help.

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Year:  1998        PMID： 9431935      PMCID： PMC124822     

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  31 in total

1.  Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis.

Authors:  A Telenti; F Marchesi; M Balz; F Bally; E C Böttger; T Bodmer
Journal:  J Clin Microbiol       Date:  1993-02       Impact factor: 5.948

2.  Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology.

Authors:  J D van Embden; M D Cave; J T Crawford; J W Dale; K D Eisenach; B Gicquel; P Hermans; C Martin; R McAdam; T M Shinnick
Journal:  J Clin Microbiol       Date:  1993-02       Impact factor: 5.948

3.  Chromosomal DNA fingerprinting analysis using the insertion sequence IS6110 and the repetitive element DR as strain-specific markers for epidemiological study of tuberculosis in French Polynesia.

Authors:  G Torrea; G Levee; P Grimont; C Martin; S Chanteau; B Gicquel
Journal:  J Clin Microbiol       Date:  1995-07       Impact factor: 5.948

4.  Characterization of Mycobacterium tuberculosis strains from Vietnamese patients by Southern blot hybridization.

Authors:  L K Yuen; B C Ross; K M Jackson; B Dwyer
Journal:  J Clin Microbiol       Date:  1993-06       Impact factor: 5.948

5.  Molecular epidemiology of Mycobacterium tuberculosis strains isolated from different regions of Italy and Pakistan.

Authors:  L A Sechi; S Zanetti; G Delogu; B Montinaro; A Sanna; G Fadda
Journal:  J Clin Microbiol       Date:  1996-07       Impact factor: 5.948

6.  Differentiation of Mycobacterium species by restriction enzyme analysis of amplified 16S-23S ribosomal DNA spacer sequences.

Authors:  P Lappayawichit; S Rienthong; D Rienthong; C Chuchottaworn; A Chaiprasert; W Panbangred; H Saringcarinkul; P Palittapongarnpim
Journal:  Tuber Lung Dis       Date:  1996-06

7.  Large-scale DNA fingerprinting of Mycobacterium tuberculosis strains as a tool for epidemiological studies of tuberculosis.

Authors:  D Chevrel-Dellagi; A Abderrahman; R Haltiti; H Koubaji; B Gicquel; K Dellagi
Journal:  J Clin Microbiol       Date:  1993-09       Impact factor: 5.948

8.  Comparison of various repetitive DNA elements as genetic markers for strain differentiation and epidemiology of Mycobacterium tuberculosis.

Authors:  D van Soolingen; P E de Haas; P W Hermans; P M Groenen; J D van Embden
Journal:  J Clin Microbiol       Date:  1993-08       Impact factor: 5.948

9.  Comparison of phage typing and DNA fingerprinting by polymerase chain reaction for discrimination of methicillin-resistant Staphylococcus aureus strains.

Authors:  A van Belkum; R Bax; P Peerbooms; W H Goessens; N van Leeuwen; W G Quint
Journal:  J Clin Microbiol       Date:  1993-04       Impact factor: 5.948

10.  Stability of DNA fingerprint pattern produced with IS6110 in strains of Mycobacterium tuberculosis.

Authors:  M D Cave; K D Eisenach; G Templeton; M Salfinger; G Mazurek; J H Bates; J T Crawford
Journal:  J Clin Microbiol       Date:  1994-01       Impact factor: 5.948
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  17 in total

1.  PCR-Based methods for genotyping viridans group streptococci.

Authors:  S Alam; S R Brailsford; R A Whiley; D Beighton
Journal:  J Clin Microbiol       Date:  1999-09       Impact factor: 5.948

2.  Different strategies for molecular differentiation of Mycobacterium bovis strains isolated in Sardinia, Italy.

Authors:  L A Sechi; G Leori; S A Lollai; I Duprè; P Molicotti; G Fadda; S Zanetti
Journal:  Appl Environ Microbiol       Date:  1999-04       Impact factor: 4.792

Review 3.  Methodological and Clinical Aspects of the Molecular Epidemiology of Mycobacterium tuberculosis and Other Mycobacteria.

Authors:  Tomasz Jagielski; Alina Minias; Jakko van Ingen; Nalin Rastogi; Anna Brzostek; Anna Żaczek; Jarosław Dziadek
Journal:  Clin Microbiol Rev       Date:  2016-04       Impact factor: 26.132

4.  Discriminatory power and reproducibility of novel DNA typing methods for Mycobacterium tuberculosis complex strains.

Authors:  Kristin Kremer; Catherine Arnold; Angel Cataldi; M Cristina Gutiérrez; Walter H Haas; Stefan Panaiotov; Robin A Skuce; Philip Supply; Adri G M van der Zanden; Dick van Soolingen
Journal:  J Clin Microbiol       Date:  2005-11       Impact factor: 5.948

5.  Value of enterobacterial repetitive intergenic consensus PCR for study of Pasteurella multocida strains isolated from mouths of dogs.

Authors:  J Loubinoux; A Lozniewski; C Lion; D Garin; M Weber; A E Le Faou
Journal:  J Clin Microbiol       Date:  1999-08       Impact factor: 5.948

6.  Distribution of a specific 500-base-pair fragment in mycobacterium bovis isolates from Sardinian cattle.

Authors:  L A Sechi; I Duprè; G Leori; G Fadda; S Zanetti
Journal:  J Clin Microbiol       Date:  2000-10       Impact factor: 5.948

7.  Comparative evaluation of ligation-mediated PCR and spoligotyping as screening methods for genotyping of Mycobacterium tuberculosis strains.

Authors:  S Bonora; M C Gutierrez; G Di Perri; F Brunello; B Allegranzi; M Ligozzi; R Fontana; E Concia; V Vincent
Journal:  J Clin Microbiol       Date:  1999-10       Impact factor: 5.948

8.  Molecular typing of colonizing Streptococcus agalactiae strains by enterobacterial repetitive intergenic consensus PCR (ERIC-PCR) in a Chennai based hospital.

Authors:  D K Bishi; S Verghese; R S Verma
Journal:  Indian J Microbiol       Date:  2008-05-28       Impact factor: 2.461

9.  Implications of molecular genotyping of Helicobacter pylori isolates from different human populations by genomic fingerprinting of enterobacterial repetitive intergenic consensus regions for strain identification and geographic evolution.

Authors:  M Abid Hussain; Farhana Kauser; Aleem A Khan; Santosh Tiwari; Chittoor M Habibullah; Niyaz Ahmed
Journal:  J Clin Microbiol       Date:  2004-06       Impact factor: 5.948

10.  Molecular Identification of Clinical Isolates of Mycobacterium fortuitum by Random Amplified Polymorphic DNA (RAPD) Polymerase Chain Reaction and ERIC PCR.

Authors:  Azar Dokht Khosravi; Rasa Sheini Mehrabzadeh; Abbas Farahani; Hooshang Jamali
Journal:  J Clin Diagn Res       Date:  2015-12-01
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