Literature DB >> 8758110

Differentiation of Mycobacterium species by restriction enzyme analysis of amplified 16S-23S ribosomal DNA spacer sequences.

P Lappayawichit1, S Rienthong, D Rienthong, C Chuchottaworn, A Chaiprasert, W Panbangred, H Saringcarinkul, P Palittapongarnpim.   

Abstract

SETTING: Mycobacteriology research and service laboratories in Thailand.
OBJECTIVE: To evaluate the possibility of differentiating species of mycobacteria by amplifying 16S-23S ribosomal deoxyribonucleic acid (DNA) spacer and restriction enzyme analysis of the products.
DESIGN: DNA of 113 strains of mycobacteria belonging to 18 species of the genus Mycobacterium were amplified by primers PL1 (5'-GAAGTCGTAACAAGG) and PL2 (5'-CAAGGCATCCACCAT). The amplified products as well as their HaeIII-, MspI- and BstXI-digested products were visualized after agarose gel electrophoresis.
RESULTS: The amplified products of rapid-growing mycobacteria were different from the slow-growing mycobacteria. The restriction profiles of members of M. tuberculosis complex were the same as each other but different from other investigated species. The restriction profiles of some species, such as M. avium, M. intracellulare and M. gordonae, were unique, while those of the other species had more than one pattern. However, the restriction profiles of most investigated species were different from each other.
CONCLUSION: This preliminary study suggested that the method might be useful for species differentiation of some commonly isolated pathogenic mycobacteria.

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Year:  1996        PMID: 8758110     DOI: 10.1016/s0962-8479(96)90010-6

Source DB:  PubMed          Journal:  Tuber Lung Dis        ISSN: 0962-8479


  10 in total

1.  Computational approach involving use of the internal transcribed spacer 1 region for identification of Mycobacterium species.

Authors:  Amr M Mohamed; Dan J Kuyper; Peter C Iwen; Hesham H Ali; Dhundy R Bastola; Steven H Hinrichs
Journal:  J Clin Microbiol       Date:  2005-08       Impact factor: 5.948

2.  Evaluation of a fluorescence in situ hybridization assay for differentiation between tuberculous and nontuberculous Mycobacterium species in smears of Lowenstein-Jensen and Mycobacteria Growth Indicator Tube cultures using peptide nucleic acid probes.

Authors:  P Hongmanee; H Stender; O F Rasmussen
Journal:  J Clin Microbiol       Date:  2001-03       Impact factor: 5.948

3.  Use of PCR and reverse line blot hybridization macroarray based on 16S-23S rRNA gene internal transcribed spacer sequences for rapid identification of 34 mycobacterium species.

Authors:  Likuan Xiong; Fanrong Kong; Yingzhou Yang; Jinquan Cheng; Gwendolyn L Gilbert
Journal:  J Clin Microbiol       Date:  2006-10       Impact factor: 5.948

4.  Use of the INNO-LiPA-MYCOBACTERIA assay (version 2) for identification of Mycobacterium avium-Mycobacterium intracellulare-Mycobacterium scrofulaceum complex isolates.

Authors:  Léa Lebrun; François-Xavier Weill; Leila Lafendi; Florence Houriez; François Casanova; M Cristina Gutierrez; Didier Ingrand; Philippe Lagrange; Véronique Vincent; Jean Louis Herrmann
Journal:  J Clin Microbiol       Date:  2005-06       Impact factor: 5.948

5.  A PCR-colorimetric microwell plate hybridization assay for detection of Mycobacterium tuberculosis and M. avium from culture samples and Ziehl-Neelsen-positive smears.

Authors:  M C Rossi; A Gori; G Zehender; G Marchetti; G Ferrario; C De Maddalena; L Catozzi; A Bandera; A D Esposti; F Franzetti
Journal:  J Clin Microbiol       Date:  2000-05       Impact factor: 5.948

6.  Enterobacterial repetitive intergenic consensus sequences as molecular targets for typing of Mycobacterium tuberculosis strains.

Authors:  L A Sechi; S Zanetti; I Dupré; G Delogu; G Fadda
Journal:  J Clin Microbiol       Date:  1998-01       Impact factor: 5.948

7.  Detection and identification of mycobacteria by amplification of the internal transcribed spacer regions with genus- and species-specific PCR primers.

Authors:  H Park; H Jang; C Kim; B Chung; C L Chang; S K Park; S Song
Journal:  J Clin Microbiol       Date:  2000-11       Impact factor: 5.948

8.  Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases.

Authors:  A Roth; U Reischl; A Streubel; L Naumann; R M Kroppenstedt; M Habicht; M Fischer; H Mauch
Journal:  J Clin Microbiol       Date:  2000-03       Impact factor: 5.948

9.  Differentiation between Mycobacterium tuberculosis and Mycobacterium avium by amplification of the 16S-23S ribosomal DNA spacer.

Authors:  A Sansila; P Hongmanee; C Chuchottaworn; S Rienthong; D Rienthong; P Palittapongarnpim
Journal:  J Clin Microbiol       Date:  1998-09       Impact factor: 5.948

10.  Tuberculosis in Birds: Insights into the Mycobacterium avium Infections.

Authors:  Kuldeep Dhama; Mahesh Mahendran; Ruchi Tiwari; Shambhu Dayal Singh; Deepak Kumar; Shoorvir Singh; Pradeep Mahadev Sawant
Journal:  Vet Med Int       Date:  2011-07-04
  10 in total

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