Literature DB >> 9421530

Three-dimensional structure of the yeast ribosome.

A Verschoor1, J R Warner, S Srivastava, R A Grassucci, J Frank.   

Abstract

The 80S ribosome from Saccharomyces cerevisiae has been reconstructed from cryo electron micrographs to a resolution of 35 A. It is strikingly similar to the 70S ribosome from Escherichia coli, while displaying the characteristic eukaryotic features familiar from reconstructions of ribosomes from higher eukaryotes. Aside from the elaboration of a number of peripherally located features on the two subunits and greater overall size, the largest difference between the yeast and E.coli ribosomes is in a mass increase on one side of the large (60S) subunit. It thus appears more elliptical than the characteristically globular 50S subunit from E.coli. The interior of the 60S subunit reveals a variable diameter tunnel spanning the subunit between the interface canyon and a site on the lower back of the subunit, presumably the exit site through which the nascent polypeptide chain emerges from the ribosome.

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Year:  1998        PMID: 9421530      PMCID: PMC147289          DOI: 10.1093/nar/26.2.655

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  23 in total

Review 1.  A model of the translational apparatus based on a three-dimensional reconstruction of the Escherichia coli ribosome.

Authors:  J Frank; A Verschoor; Y Li; J Zhu; R K Lata; M Radermacher; P Penczek; R Grassucci; R K Agrawal; S Srivastava
Journal:  Biochem Cell Biol       Date:  1995 Nov-Dec       Impact factor: 3.626

Review 2.  Cryo-electron microscopy of vitrified specimens.

Authors:  J Dubochet; M Adrian; J J Chang; J C Homo; J Lepault; A W McDowall; P Schultz
Journal:  Q Rev Biophys       Date:  1988-05       Impact factor: 5.318

3.  GTP hydrolysis controls stringent selection of the AUG start codon during translation initiation in Saccharomyces cerevisiae.

Authors:  H K Huang; H Yoon; E M Hannig; T F Donahue
Journal:  Genes Dev       Date:  1997-09-15       Impact factor: 11.361

4.  Electron microscopy and computer image averaging of ice-embedded large ribosomal subunits from Escherichia coli.

Authors:  T Wagenknecht; R Grassucci; J Frank
Journal:  J Mol Biol       Date:  1988-01-05       Impact factor: 5.469

5.  A new resolution criterion based on spectral signal-to-noise ratios.

Authors:  M Unser; B L Trus; A C Steven
Journal:  Ultramicroscopy       Date:  1987       Impact factor: 2.689

6.  The ribosomal proteins of Saccharomyces cerevisiae.

Authors:  J R Warner; C Gorenstein
Journal:  Methods Cell Biol       Date:  1978       Impact factor: 1.441

7.  The 70S Escherichia coli ribosome at 23 A resolution: fitting the ribosomal RNA.

Authors:  H Stark; F Mueller; E V Orlova; M Schatz; P Dube; T Erdemir; F Zemlin; R Brimacombe; M van Heel
Journal:  Structure       Date:  1995-08-15       Impact factor: 5.006

8.  Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy.

Authors:  B Böttcher; S A Wynne; R A Crowther
Journal:  Nature       Date:  1997-03-06       Impact factor: 49.962

9.  A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome.

Authors:  J Frank; J Zhu; P Penczek; Y Li; S Srivastava; A Verschoor; M Radermacher; R Grassucci; R K Lata; R K Agrawal
Journal:  Nature       Date:  1995-08-03       Impact factor: 49.962

10.  Native 3D structure of eukaryotic 80s ribosome: morphological homology with E. coli 70S ribosome.

Authors:  A Verschoor; S Srivastava; R Grassucci; J Frank
Journal:  J Cell Biol       Date:  1996-05       Impact factor: 10.539

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  22 in total

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2.  Direct mass spectrometric analysis of intact proteins of the yeast large ribosomal subunit using capillary LC/FTICR.

Authors:  Sang-Won Lee; Scott J Berger; Suzana Martinović; Ljiljana Pasa-Tolić; Gordon A Anderson; Yufeng Shen; Rui Zhao; Richard D Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

3.  Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution.

Authors:  M G Gomez-Lorenzo; C M Spahn; R K Agrawal; R A Grassucci; P Penczek; K Chakraburtty; J P Ballesta; J L Lavandera; J F Garcia-Bustos; J Frank
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

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Authors:  Axel W Strittmatter; Claudia Fischer; Malte Kleinschmidt; Gerhard H Braus
Journal:  Mol Genet Genomics       Date:  2006-05-24       Impact factor: 3.291

5.  Uncovering the rules for protein-protein interactions from yeast genomic data.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

6.  A direct interaction between the Utp6 half-a-tetratricopeptide repeat domain and a specific peptide in Utp21 is essential for efficient pre-rRNA processing.

Authors:  Erica A Champion; Bennett H Lane; Meredith E Jackrel; Lynne Regan; Susan J Baserga
Journal:  Mol Cell Biol       Date:  2008-08-25       Impact factor: 4.272

7.  Form follows function: structure of an elongation factor G-ribosome complex.

Authors:  M V Rodnina; W Wintermeyer
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-23       Impact factor: 11.205

8.  Ribosome flow model with extended objects.

Authors:  Yoram Zarai; Michael Margaliot; Tamir Tuller
Journal:  J R Soc Interface       Date:  2017-10       Impact factor: 4.118

9.  Identifying the assembly intermediate in which Gag first associates with unspliced HIV-1 RNA suggests a novel model for HIV-1 RNA packaging.

Authors:  Brook C Barajas; Motoko Tanaka; Bridget A Robinson; Daryl J Phuong; Kasana Chutiraka; Jonathan C Reed; Jaisri R Lingappa
Journal:  PLoS Pathog       Date:  2018-04-17       Impact factor: 6.823

10.  Atomic force microscopy reveals DNA bending during group II intron ribonucleoprotein particle integration into double-stranded DNA.

Authors:  James W Noah; Soyeun Park; Jacob T Whitt; Jiri Perutka; Wolfgang Frey; Alan M Lambowitz
Journal:  Biochemistry       Date:  2006-10-17       Impact factor: 3.162

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