Literature DB >> 7582898

The 70S Escherichia coli ribosome at 23 A resolution: fitting the ribosomal RNA.

H Stark1, F Mueller, E V Orlova, M Schatz, P Dube, T Erdemir, F Zemlin, R Brimacombe, M van Heel.   

Abstract

BACKGROUND: The ribosome--essential for protein synthesis in all organisms--has been an evasive target for structural studies. The best available structures for the 70S Escherichia coli ribosome or its 30S and 50S subunits are based on electron microscopical tilt experiments and are limited in resolution to 28-55 A. The angular reconstitution approach, which exploits the random orientations of particles within a vitreous ice matrix, can be used in conjunction with cryo-electron microscopy to yield a higher-resolution structure.
RESULTS: Our 23 A resolution map of the 70S ribosome elucidates many structural details, such as an extensive system of channels within the 50S subunit and an intersubunit gap ideally shaped to accommodate two transfer RNA molecules. The resolution achieved is sufficient to allow the preliminary fitting of double-helical regions of an earlier three-dimensional ribosomal RNA model.
CONCLUSIONS: Although we are still a long way from attaining an atomic-resolution structure of the ribosome, cryo-electron microscopy, in combination with angular reconstitution, is likely to yield three-dimensional maps with gradually increasing resolution. As exemplified by our current 23 A reconstruction, these maps will lead to progressive refinement of models of the ribosomal RNA.

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Year:  1995        PMID: 7582898     DOI: 10.1016/s0969-2126(01)00216-7

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  40 in total

1.  The small ribosomal subunit from Thermus thermophilus at 4.5 A resolution: pattern fittings and the identification of a functional site.

Authors:  A Tocilj; F Schlünzen; D Janell; M Glühmann; H A Hansen; J Harms; A Bashan; H Bartels; I Agmon; F Franceschi; A Yonath
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

Review 2.  Macromolecular mimicry.

Authors:  P Nissen; M Kjeldgaard; J Nyborg
Journal:  EMBO J       Date:  2000-02-15       Impact factor: 11.598

Review 3.  Generalized single-particle cryo-EM--a historical perspective.

Authors:  Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-11-12       Impact factor: 1.571

4.  Domain flexibility modulates the heterogeneous assembly mechanism of anthrax toxin protective antigen.

Authors:  Geoffrey K Feld; Alexander F Kintzer; Iok I Tang; Katie L Thoren; Bryan A Krantz
Journal:  J Mol Biol       Date:  2011-10-31       Impact factor: 5.469

Review 5.  Exploring the mechanism of protein synthesis with modified substrates and novel intermediate mimics.

Authors:  Joshua S Weinger; Scott A Strobel
Journal:  Blood Cells Mol Dis       Date:  2006-12-21       Impact factor: 3.039

Review 6.  Large facilities and the evolving ribosome, the cellular machine for genetic-code translation.

Authors:  Ada Yonath
Journal:  J R Soc Interface       Date:  2009-08-05       Impact factor: 4.118

7.  Crystal structure of the RNA binding ribosomal protein L1 from Thermus thermophilus.

Authors:  S Nikonov; N Nevskaya; I Eliseikina; N Fomenkova; A Nikulin; N Ossina; M Garber; B H Jonsson; C Briand; S Al-Karadaghi; A Svensson; A Aevarsson; A Liljas
Journal:  EMBO J       Date:  1996-03-15       Impact factor: 11.598

8.  Single-particle selection and alignment with heavy atom cluster-antibody conjugates.

Authors:  G J Jensen; R D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

9.  E pluribus tres: the 2009 nobel prize in chemistry.

Authors:  Charles W Carter
Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

Review 10.  Toward an understanding of the structural basis of translation.

Authors:  Joachim Frank
Journal:  Genome Biol       Date:  2003-11-19       Impact factor: 13.583

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