Literature DB >> 7630422

A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome.

J Frank1, J Zhu, P Penczek, Y Li, S Srivastava, A Verschoor, M Radermacher, R Grassucci, R K Lata, R K Agrawal.   

Abstract

The ribosome is formed by assembly of proteins and nucleic acids, and synthesizes proteins according to genetic instructions in all organisms. Many of the biochemical steps of this fundamental process are known, but a detailed understanding requires a well-defined structural model of the ribosome. Electron microscopy combined with image reconstruction of two-dimensional crystals or single ribosomes has been the most promising technique, but the resolution of the resulting models has been insufficient. Here we report a 25-A reconstruction of the ribosome from Escherichia coli, obtained by combining 4,300 projections of ice-embedded single particles. Our new reconstruction reveals a channel in the small ribosomal subunit and a bifurcating tunnel in the large subunit which may constitute pathways for the incoming message and the nascent polypeptide chain, respectively. Based on these new findings, a three-dimensional model of the basic framework of protein synthesis is presented.

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Year:  1995        PMID: 7630422     DOI: 10.1038/376441a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  82 in total

1.  The small ribosomal subunit from Thermus thermophilus at 4.5 A resolution: pattern fittings and the identification of a functional site.

Authors:  A Tocilj; F Schlünzen; D Janell; M Glühmann; H A Hansen; J Harms; A Bashan; H Bartels; I Agmon; F Franceschi; A Yonath
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

Review 2.  Macromolecular mimicry.

Authors:  P Nissen; M Kjeldgaard; J Nyborg
Journal:  EMBO J       Date:  2000-02-15       Impact factor: 11.598

3.  Location of translational initiation factor IF3 on the small ribosomal subunit.

Authors:  J P McCutcheon; R K Agrawal; S M Philips; R A Grassucci; S E Gerchman; W M Clemons; V Ramakrishnan; J Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

4.  Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing.

Authors:  D I Svergun
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

5.  Qsr1p, a 60S ribosomal subunit protein, is required for joining of 40S and 60S subunits.

Authors:  D P Eisinger; F A Dick; B L Trumpower
Journal:  Mol Cell Biol       Date:  1997-09       Impact factor: 4.272

6.  Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution.

Authors:  M G Gomez-Lorenzo; C M Spahn; R K Agrawal; R A Grassucci; P Penczek; K Chakraburtty; J P Ballesta; J L Lavandera; J F Garcia-Bustos; J Frank
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

7.  Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates.

Authors:  Bethany S Strunk; Cherisse R Loucks; Min Su; Harish Vashisth; Shanshan Cheng; Justin Schilling; Charles L Brooks; Katrin Karbstein; Georgios Skiniotis
Journal:  Science       Date:  2011-08-11       Impact factor: 47.728

Review 8.  Generalized single-particle cryo-EM--a historical perspective.

Authors:  Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-11-12       Impact factor: 1.571

9.  E pluribus tres: the 2009 nobel prize in chemistry.

Authors:  Charles W Carter
Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

10.  A ribosome-nascent chain sensor of membrane protein biogenesis in Bacillus subtilis.

Authors:  Shinobu Chiba; Anne Lamsa; Kit Pogliano
Journal:  EMBO J       Date:  2009-09-24       Impact factor: 11.598

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