Literature DB >> 9414320

A first-generation whole genome-radiation hybrid map spanning the mouse genome.

L C McCarthy1, J Terrett, M E Davis, C J Knights, A L Smith, R Critcher, K Schmitt, J Hudson, N K Spurr, P N Goodfellow.   

Abstract

We have assembled a first-generation anchor map of the mouse genome using a panel of 94 whole-genome-radiation hybrids (WG-RHs) and 271 sequence-tagged sites (STSs). This is the first genome-wide RH anchor map of a model organism. All of the STSs have been previously localized on the genetic map and are located 8.8 Mb apart on average. This mouse WG-RH panel, known as T31, has an average retention frequency of 27.6% and an estimated potential resolution of 145 kb, making it a powerful resource for efficient large-scale expressed sequence tag mapping. [All of the mapping data for the maps presented here have been deposited at the Research Genetics, Inc., web site and can be freely accessed and downloaded at http://www.resgen.com/.]

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Year:  1997        PMID: 9414320      PMCID: PMC310677          DOI: 10.1101/gr.7.12.1153

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  23 in total

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Authors:  S J Goss; H Harris
Journal:  Nature       Date:  1975-06-26       Impact factor: 49.962

2.  Statistical methods for multipoint radiation hybrid mapping.

Authors:  M Boehnke; K Lange; D R Cox
Journal:  Am J Hum Genet       Date:  1991-12       Impact factor: 11.025

3.  Whole genome radiation hybrid mapping.

Authors:  L C McCarthy
Journal:  Trends Genet       Date:  1996-12       Impact factor: 11.639

4.  Fluorescence in situ hybridization with Alu and L1 polymerase chain reaction probes for rapid characterization of human chromosomes in hybrid cell lines.

Authors:  P Lichter; S A Ledbetter; D H Ledbetter; D C Ward
Journal:  Proc Natl Acad Sci U S A       Date:  1990-09       Impact factor: 11.205

Review 5.  Mapping of mammalian genomes with radiation (Goss and Harris) hybrids.

Authors:  R J Leach; P O'Connell
Journal:  Adv Genet       Date:  1995       Impact factor: 1.944

Review 6.  Radiation hybrids: irradiation and fusion gene transfer.

Authors:  M A Walter; P N Goodfellow
Journal:  Trends Genet       Date:  1993-10       Impact factor: 11.639

7.  A genetic map of the mouse with 4,006 simple sequence length polymorphisms.

Authors:  W F Dietrich; J C Miller; R G Steen; M Merchant; D Damron; R Nahf; A Gross; D C Joyce; M Wessel; R D Dredge
Journal:  Nat Genet       Date:  1994-06       Impact factor: 38.330

8.  A method for constructing radiation hybrid maps of whole genomes.

Authors:  M A Walter; D J Spillett; P Thomas; J Weissenbach; P N Goodfellow
Journal:  Nat Genet       Date:  1994-05       Impact factor: 38.330

9.  Towards high resolution maps of the mouse and human genomes--a facility for ordering markers to 0.1 cM resolution. European Backcross Collaborative Group.

Authors: 
Journal:  Hum Mol Genet       Date:  1994-04       Impact factor: 6.150

10.  Towards construction of a high resolution map of the mouse genome using PCR-analysed microsatellites.

Authors:  J M Love; A M Knight; M A McAleer; J A Todd
Journal:  Nucleic Acids Res       Date:  1990-07-25       Impact factor: 16.971

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  40 in total

1.  Radiation hybrid mapping of the zebrafish genome.

Authors:  N A Hukriede; L Joly; M Tsang; J Miles; P Tellis; J A Epstein; W B Barbazuk; F N Li; B Paw; J H Postlethwait; T J Hudson; L I Zon; J D McPherson; M Chevrette; I B Dawid; S L Johnson; M Ekker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  A comprehensive view of human chromosome 1.

Authors:  P S White; E P Sulman; C J Porter; T C Matise
Journal:  Genome Res       Date:  1999-10       Impact factor: 9.043

3.  Panel of microsatellite markers for whole-genome scans and radiation hybrid mapping and a mouse family tree.

Authors:  L C Schalkwyk; M Jung; A Daser; M Weiher; J Walter; H Himmelbauer; H Lehrach
Journal:  Genome Res       Date:  1999-09       Impact factor: 9.043

4.  Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping.

Authors:  W J Murphy; S Sun; Z Q Chen; J Pecon-Slattery; S J O'Brien
Journal:  Genome Res       Date:  1999-12       Impact factor: 9.043

5.  Advanced integrated mouse YAC map including BAC framework.

Authors:  L C Schalkwyk; B Cusack; I Dunkel; M Hopp; M Kramer; S Palczewski; J Piefke; S Scheel; M Weiher; G Wenske; H Lehrach; H Himmelbauer
Journal:  Genome Res       Date:  2001-12       Impact factor: 9.043

6.  High-resolution BAC-based map of the central portion of mouse chromosome 5.

Authors:  J Crabtree; T Wiltshire; B Brunk; S Zhao; J Schug; C J Stoeckert; M Bucan
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

7.  High-resolution radiation hybrid map of wheat chromosome 1D.

Authors:  Venu Kalavacharla; Khwaja Hossain; Yong Gu; Oscar Riera-Lizarazu; M Isabel Vales; Suresh Bhamidimarri; Jose L Gonzalez-Hernandez; Shivcharan S Maan; Shahryar F Kianian
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

8.  Exploiting plant somatic radiation hybrids for physical mapping of expressed sequence tags.

Authors:  J Wardrop; J Fuller; W Powell; G C Machray
Journal:  Theor Appl Genet       Date:  2003-09-25       Impact factor: 5.699

9.  The comprehensive mouse radiation hybrid map densely cross-referenced to the recombination map: a tool to support the sequence assemblies.

Authors:  Lucy B Rowe; Mary E Barter; Jennifer A Kelmenson; Janan T Eppig
Journal:  Genome Res       Date:  2003-01       Impact factor: 9.043

10.  Application of AFLP technology to radiation hybrid mapping.

Authors:  C Gorni; J L Williams; H C M Heuven; R Negrini; A Valentini; M J T van Eijk; D Waddington; M Zevenbergen; P Ajmone Marsan; J D Peleman
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

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