Literature DB >> 21517425

Analytical description of extension, torque, and supercoiling radius of a stretched twisted DNA.

Sébastien Neukirch1, John F Marko.   

Abstract

We study the mixture of extended and supercoiled DNA that occurs in a twisted DNA molecule under tension. Closed-form asymptotic solutions for the supercoiling radius, extension, and torque of the molecule are obtained in the high-force limit where electrostatic and elastic effects dominate. We demonstrate that experimental data obey the extension and torque scaling laws apparent in our formulas, in the regime where thermal fluctuation effects are quenched by applied force.
© 2011 American Physical Society

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Year:  2011        PMID: 21517425      PMCID: PMC3120040          DOI: 10.1103/PhysRevLett.106.138104

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  12 in total

1.  Electrostatic-undulatory theory of plectonemically supercoiled DNA.

Authors:  J Ubbink; T Odijk
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

2.  Torque and dynamics of linking number relaxation in stretched supercoiled DNA.

Authors:  John F Marko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-29

3.  Measurement of the torque on a single stretched and twisted DNA using magnetic tweezers.

Authors:  Francesco Mosconi; Jean François Allemand; David Bensimon; Vincent Croquette
Journal:  Phys Rev Lett       Date:  2009-02-17       Impact factor: 9.161

4.  Elasticity and electrostatics of plectonemic DNA.

Authors:  N Clauvelin; B Audoly; S Neukirch
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

5.  Maxwell relations for single-DNA experiments: Monitoring protein binding and double-helix torque with force-extension measurements.

Authors:  Houyin Zhang; John F Marko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-03-18

6.  Statistical mechanics of supercoiled DNA.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1995-09

7.  Torsional directed walks, entropic elasticity, and DNA twist stiffness.

Authors:  J D Moroz; P Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-23       Impact factor: 11.205

8.  Electrical double layer, zeta potential, and electrophoretic charge of double-stranded DNA.

Authors:  J A Schellman
Journal:  Biopolymers       Date:  1977-07       Impact factor: 2.505

9.  DNA-DNA interactions in tight supercoils are described by a small effective charge density.

Authors:  Christopher Maffeo; Robert Schöpflin; Hergen Brutzer; René Stehr; Aleksei Aksimentiev; Gero Wedemann; Ralf Seidel
Journal:  Phys Rev Lett       Date:  2010-10-04       Impact factor: 9.161

10.  The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo.

Authors:  J Bednar; P Furrer; A Stasiak; J Dubochet; E H Egelman; A D Bates
Journal:  J Mol Biol       Date:  1994-01-21       Impact factor: 5.469

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  26 in total

1.  Competition between curls and plectonemes near the buckling transition of stretched supercoiled DNA.

Authors:  John F Marko; Sébastien Neukirch
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-11

2.  WASP: a software package for correctly characterizing the topological development of ribbon structures.

Authors:  Zachary Sierzega; Jeff Wereszczynski; Chris Prior
Journal:  Sci Rep       Date:  2021-01-15       Impact factor: 4.379

3.  Torque and buckling in stretched intertwined double-helix DNAs.

Authors:  Sumitabha Brahmachari; John F Marko
Journal:  Phys Rev E       Date:  2017-05-01       Impact factor: 2.529

4.  Thermodynamics of long supercoiled molecules: insights from highly efficient Monte Carlo simulations.

Authors:  Thibaut Lepage; François Képès; Ivan Junier
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

Review 5.  The dynamic interplay between DNA topoisomerases and DNA topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-11-14

6.  Competition between supercoils and toroids in single molecule DNA condensation.

Authors:  David Argudo; Prashant K Purohit
Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

7.  Ionic effects on the temperature-force phase diagram of DNA.

Authors:  Sitichoke Amnuanpol
Journal:  J Biol Phys       Date:  2017-09-14       Impact factor: 1.365

8.  Defect-facilitated buckling in supercoiled double-helix DNA.

Authors:  Sumitabha Brahmachari; Andrew Dittmore; Yasuharu Takagi; Keir C Neuman; John F Marko
Journal:  Phys Rev E       Date:  2018-02       Impact factor: 2.529

9.  The Dynamic Interplay Between DNA Topoisomerases and DNA Topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-07-02

10.  Physiological levels of salt and polyamines favor writhe and limit twist in DNA.

Authors:  Qing Shao; Sachin Goyal; Laura Finzi; David Dunlap
Journal:  Macromolecules       Date:  2012-03-30       Impact factor: 5.985

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