Literature DB >> 9405156

Use of organic cosmotropic solutes to crystallize flexible proteins: application to T7 RNA polymerase and its complex with the inhibitor T7 lysozyme.

D Jeruzalmi1, T A Steitz.   

Abstract

We have crystallized, using several approaches that may be of general interest, T7 RNA polymerase (T7RP) and the T7 RNA polymerase-T7 lysozyme complex (T7RPL) in forms suitable for structure determination by X-ray crystallography. A series of polyhydric alcohols, sugars, amino and methylamino acids, compounds known to stabilize protein structure, were found to be critical for both crystallization and subsequent improvement of the crystal's diffraction resolution. Moreover, optimal crystallogenesis was achieved through an unconventional "reverse" vapor diffusion sitting drop method that is suitable for proteins that are insoluble at low ionic strength.T7RP has been crystallized in an orthorhombic form (I), space group P222, with cell parameters a=220 A, b=205 A, c=67 A and a monoclinic form (II), space group P21, with cell parameters a=229 A, b=205 A, c=70 A, beta=106 degrees. Crystal form I diffracts X-rays to 3.5 A and form II to 6.0 A. Three and six copies of the polymerase are predicted to be in the asymmetric unit forms I and II, respectively. Three monoclinic crystal forms of the T7RPL complex have been obtained in space group C2. Form I has cell parameters a=320 A, b=93 A, c=229 A, beta=129 degrees, form II has parameters a=293 A, b=93 A, c=68 A, beta=93 degrees, and form III has parameters a=270 A, b=93 A, c=63 A, beta=103 degrees. Crystal form I diffracts synchrotron wiggler radiation to 3.2 A and form III to 2.8 A. Calculations of crystal density imply three or four copies of the complex in form I and one copy in the asymmetric unit of forms II and III. Copyright 1997 Academic Press Limited.

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Year:  1997        PMID: 9405156     DOI: 10.1006/jmbi.1997.1366

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  10 in total

1.  Amino acids and glycine ethyl ester as new crystallization reagents for lysozyme.

Authors:  Len Ito; Kentaro Shiraki; Hiroshi Yamaguchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-27

2.  Comparative analysis of amino acids and amino-acid derivatives in protein crystallization.

Authors:  Len Ito; Kentaro Shiraki; Hiroshi Yamaguchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-27

3.  A multi-step strategy to obtain crystals of the dengue virus RNA-dependent RNA polymerase that diffract to high resolution.

Authors:  Thai Leong Yap; Yen Liang Chen; Ting Xu; Daying Wen; Subhash G Vasudevan; Julien Lescar
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-01-17

4.  Structure of T7 RNA polymerase complexed to the transcriptional inhibitor T7 lysozyme.

Authors:  D Jeruzalmi; T A Steitz
Journal:  EMBO J       Date:  1998-07-15       Impact factor: 11.598

Review 5.  Optimization of crystallization conditions for biological macromolecules.

Authors:  Alexander McPherson; Bob Cudney
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

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7.  Purification, crystallization and preliminary X-ray crystallographic analysis of squid heavy meromyosin.

Authors:  Elizabeth O'Neall-Hennessey; Ludmila Reshetnikova; V S Senthil Kumar; Howard Robinson; Andrew G Szent-Györgyi; Carolyn Cohen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-02-22

8.  Introductory lecture: interpreting and predicting Hofmeister salt ion and solute effects on biopolymer and model processes using the solute partitioning model.

Authors:  M Thomas Record; Emily Guinn; Laurel Pegram; Michael Capp
Journal:  Faraday Discuss       Date:  2013       Impact factor: 4.008

9.  Specific binding of a hexanucleotide to HIV-1 reverse transcriptase: a novel class of bioactive molecules.

Authors:  Alessandra Mescalchin; Winfried Wünsche; Sandra D Laufer; Dina Grohmann; Tobias Restle; Georg Sczakiel
Journal:  Nucleic Acids Res       Date:  2006-10-12       Impact factor: 16.971

10.  Proteomics with a pinch of salt: a cyanobacterial perspective.

Authors:  Jagroop Pandhal; Phillip C Wright; Catherine A Biggs
Journal:  Saline Systems       Date:  2008-04-15
  10 in total

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