Literature DB >> 17277444

A multi-step strategy to obtain crystals of the dengue virus RNA-dependent RNA polymerase that diffract to high resolution.

Thai Leong Yap1, Yen Liang Chen, Ting Xu, Daying Wen, Subhash G Vasudevan, Julien Lescar.   

Abstract

Dengue virus, a member of the Flaviviridae genus, causes dengue fever, an important emerging disease with several million infections occurring annually for which no effective therapy exists. The viral RNA-dependent RNA polymerase NS5 plays an important role in virus replication and represents an interesting target for the development of specific antiviral compounds. Crystals that diffract to 1.85 A resolution that are suitable for three-dimensional structure determination and thus for a structure-based drug-design program have been obtained using a strategy that included expression screening of naturally occurring serotype variants of the protein, the addition of divalent metal ions and crystal dehydration.

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Year:  2007        PMID: 17277444      PMCID: PMC2330120          DOI: 10.1107/S1744309106055084

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

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Authors:  A G Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

2.  The 37-amino-acid interdomain of dengue virus NS5 protein contains a functional NLS and inhibitory CK2 site.

Authors:  J K Forwood; A Brooks; L J Briggs; C Y Xiao; D A Jans; S G Vasudevan
Journal:  Biochem Biophys Res Commun       Date:  1999-04-21       Impact factor: 3.575

Review 3.  Post-crystallization treatments for improving diffraction quality of protein crystals.

Authors:  Begoña Heras; Jennifer L Martin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-08-16

4.  Crystal structure of the dengue virus RNA-dependent RNA polymerase catalytic domain at 1.85-angstrom resolution.

Authors:  Thai Leong Yap; Ting Xu; Yen-Liang Chen; Helene Malet; Marie-Pierre Egloff; Bruno Canard; Subhash G Vasudevan; Julien Lescar
Journal:  J Virol       Date:  2007-02-14       Impact factor: 5.103

5.  Continuous and discontinuous changes in the unit cell of HIV-1 reverse transcriptase crystals on dehydration.

Authors:  R M Esnouf; J Ren; E F Garman; D O Somers; C K Ross; E Y Jones; D K Stammers; D I Stuart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

6.  Relative effectiveness of various ions on the solubility and crystal growth of lysozyme.

Authors:  M M Ries-Kautt; A F Ducruix
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

7.  Crystallization and preliminary X-ray diffraction data of two heparin-binding fragments of human fibronectin.

Authors:  I Pechik; J Nachman; K Ingham; G L Gilliland
Journal:  Proteins       Date:  1993-05

8.  Crystallization of ribozymes and small RNA motifs by a sparse matrix approach.

Authors:  J A Doudna; C Grosshans; A Gooding; C E Kundrot
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-15       Impact factor: 11.205

9.  Computer-assisted dissection of rolling circle DNA replication.

Authors:  E V Koonin; T V Ilyina
Journal:  Biosystems       Date:  1993       Impact factor: 1.973

Review 10.  Recent advances in discovery and development of promising therapeutics against hepatitis C virus NS5B RNA-dependent RNA polymerase.

Authors:  Jim Zhen Wu; Nanhua Yao; Michelle Walker; Zhi Hong
Journal:  Mini Rev Med Chem       Date:  2005-12       Impact factor: 3.862

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  9 in total

1.  Measurement of the equilibrium relative humidity for common precipitant concentrations: facilitating controlled dehydration experiments.

Authors:  Matthew J Wheeler; Silvia Russi; Michael G Bowler; Matthew W Bowler
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

2.  Crystal structure of the dengue virus RNA-dependent RNA polymerase catalytic domain at 1.85-angstrom resolution.

Authors:  Thai Leong Yap; Ting Xu; Yen-Liang Chen; Helene Malet; Marie-Pierre Egloff; Bruno Canard; Subhash G Vasudevan; Julien Lescar
Journal:  J Virol       Date:  2007-02-14       Impact factor: 5.103

3.  Crystal structure of the NS3 protease-helicase from dengue virus.

Authors:  Dahai Luo; Ting Xu; Cornelia Hunke; Gerhard Grüber; Subhash G Vasudevan; Julien Lescar
Journal:  J Virol       Date:  2007-10-17       Impact factor: 5.103

4.  Conformational flexibility of the Dengue virus RNA-dependent RNA polymerase revealed by a complex with an inhibitor.

Authors:  Christian G Noble; Siew Pheng Lim; Yen-Liang Chen; Chong Wai Liew; Lijian Yap; Julien Lescar; Pei-Yong Shi
Journal:  J Virol       Date:  2013-02-13       Impact factor: 5.103

5.  Increasing the X-ray diffraction power of protein crystals by dehydration: the case of bovine serum albumin and a survey of literature data.

Authors:  Irene Russo Krauss; Filomena Sica; Carlo Andrea Mattia; Antonello Merlino
Journal:  Int J Mol Sci       Date:  2012-03-21       Impact factor: 6.208

6.  Raoult's law revisited: accurately predicting equilibrium relative humidity points for humidity control experiments.

Authors:  Michael G Bowler; David R Bowler; Matthew W Bowler
Journal:  J Appl Crystallogr       Date:  2017-03-29       Impact factor: 3.304

7.  A crystal structure of the dengue virus non-structural protein 5 (NS5) polymerase delineates interdomain amino acid residues that enhance its thermostability and de novo initiation activities.

Authors:  Siew Pheng Lim; Jolene Hong Kiew Koh; Cheah Chen Seh; Chong Wai Liew; Andrew D Davidson; Leng Shiew Chua; Ramya Chandrasekaran; Tobias C Cornvik; Pei-Yong Shi; Julien Lescar
Journal:  J Biol Chem       Date:  2013-09-11       Impact factor: 5.157

8.  Nuclear localization of dengue virus nonstructural protein 5 does not strictly correlate with efficient viral RNA replication and inhibition of type I interferon signaling.

Authors:  Anil Kumar; Sandra Bühler; Barbara Selisko; Andrew Davidson; Klaas Mulder; Bruno Canard; Sven Miller; Ralf Bartenschlager
Journal:  J Virol       Date:  2013-02-13       Impact factor: 5.103

9.  An evaluation of adhesive sample holders for advanced crystallographic experiments.

Authors:  Marco Mazzorana; Juan Sanchez-Weatherby; James Sandy; Carina M C Lobley; Thomas Sorensen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-08-29
  9 in total

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