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Literature DB >> 9399877

Histone Sequence Database: new histone fold family members.

Abstract

Searches of the major public protein databases with core and linker chicken and human histone sequences have resulted in the compilation of an annotated set of histone protein sequences. In addition, new database searches with two distinct motif search algorithms have identified several members of the histone fold family, including human DRAP1 and yeast CSE4. Database resources include information on conflicts between similar sequence entries in different source databases, multiple sequence alignments, links to the Entrez integrated information retrieval system, structures for histone and histone fold proteins, and the ability to visualize structural data through Cn3D. The database currently contains >1000 protein sequences, which are searchable by protein type, accession number, organism name, or any other free text appearing in the definition line of the entry. All sequences and alignments in this database are available through the World Wide Web at http://www.nhgri.nih. gov/DIR/GTB/HISTONES or http://www.ncbi.nlm.nih. gov/Baxevani/HISTONES

Entities: Gene Species

Mesh：

Substances：
Histones

Year: 1998 PMID： 9399877 PMCID： PMC147196 DOI： 10.1093/nar/26.1.372

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

22 in total

Histone Sequence Database: new histone fold family members.

1. Basic local alignment search tool.

2. CLUSTAL V: improved software for multiple sequence alignment.

3. Histone H1 in Saccharomyces cerevisiae: a double mystery solved?

4. The PIR-International Protein Sequence Database.

5. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.

Review 6. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

7. Extracting protein alignment models from the sequence database.

8. Chromatin structure; oligomers of the histones.

9. Action of micrococcal nuclease on chromatin and the location of histone H1.

10. The histone core complex: an octamer assembled by two sets of protein-protein interactions.

1. DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches.

2. Two different Drosophila ADA2 homologues are present in distinct GCN5 histone acetyltransferase-containing complexes.

3. Functional dissection of a Rice Dr1/DrAp1 transcriptional repression complex.

4. Prodos is a conserved transcriptional regulator that interacts with dTAF(II)16 in Drosophila melanogaster.

5. Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions.

6. Cloning and characterization of the histone-fold proteins YBL1 and YCL1.

7. Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle.

8. Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning.

9. HHMD: the human histone modification database.

Review 10. Peculiarities of Plasmodium falciparum Gene Regulation and Chromatin Structure.