Literature DB >> 9399796

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.

A Bairoch1, R Apweiler.   

Abstract

SWISS-PROT (http://www.expasy.ch/) is a curated protein sequence database which strives to provide a high level of annotations (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases. Recent developments of the database include: an increase in the number and scope of model organisms; cross-references to two additional databases; a variety of new documentation files and improvements to TrEMBL, a computer annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDS) in the EMBL nucleotide sequence database, except the CDS already included in SWISS-PROT.

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Year:  1998        PMID: 9399796      PMCID: PMC147215          DOI: 10.1093/nar/26.1.38

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  The Mouse Genome Database (MGD). A comprehensive public resource of genetic, phenotypic and genomic data. The Mouse Genome Informatics Group.

Authors:  J A Blake; J E Richardson; M T Davisson; J T Eppig
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

2.  The EMBL nucleotide sequence database.

Authors:  G Stoesser; M A Moseley; J Sleep; M McGowran; M Garcia-Pastor; P Sterk
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

3.  The PROSITE database, its status in 1997.

Authors:  A Bairoch; P Bucher; K Hofmann
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

4.  The SWISS-PROT protein sequence data bank and its supplement TrEMBL.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

5.  SRS--an indexing and retrieval tool for flat file data libraries.

Authors:  T Etzold; P Argos
Journal:  Comput Appl Biosci       Date:  1993-02

6.  The ENZYME data bank in 1995.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

7.  A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.

Authors:  R D Appel; A Bairoch; D F Hochstrasser
Journal:  Trends Biochem Sci       Date:  1994-06       Impact factor: 13.807

  7 in total
  53 in total

1.  The EMBL nucleotide sequence database.

Authors:  W Baker; A van den Broek; E Camon; P Hingamp; P Sterk; G Stoesser; M A Tuli
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

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Authors:  N D Rawlings; A J Barrett
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

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Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

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Authors:  S R Durell; Y Hao; T Nakamura; E P Bakker; H R Guy
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Authors:  O Emanuelsson; H Nielsen; G von Heijne
Journal:  Protein Sci       Date:  1999-05       Impact factor: 6.725

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7.  Rationally selected basis proteins: a new approach to selecting proteins for spectroscopic secondary structure analysis.

Authors:  Keith A Oberg; Jean-Marie Ruysschaert; Erik Goormaghtigh
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

8.  Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.

Authors:  M Pellegrini; E M Marcotte; M J Thompson; D Eisenberg; T O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

9.  Automated structure prediction of weakly homologous proteins on a genomic scale.

Authors:  Yang Zhang; Jeffrey Skolnick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-04       Impact factor: 11.205

10.  THGS: a web-based database of Transmembrane Helices in Genome Sequences.

Authors:  S A Fernando; P Selvarani; Soma Das; Ch Kiran Kumar; Sukanta Mondal; S Ramakumar; K Sekar
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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