Literature DB >> 11752300

FIMM, a database of functional molecular immunology: update 2002.

Christian Schönbach1, Judice L Y Koh, Darren R Flower, Limsoon Wong, Vladimir Brusic.   

Abstract

FIMM database (http://sdmc.krdl.org.sg:8080/fimm) contains data relevant to functional molecular immunology, focusing on cellular immunology. It contains fully referenced data on protein antigens, major histocompatibility complex (MHC) molecules, MHC-associated peptides and relevant disease associations. FIMM has a set of search tools for extraction of information and results are presented as lists or as reports.

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Year:  2002        PMID： 11752300      PMCID： PMC99079          DOI： 10.1093/nar/30.1.226

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  18 in total

1.  FIMM, a database of functional molecular immunology.

Authors:  C Schönbach; J L Koh; X Sheng; L Wong; V Brusic
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  GenBank.

Authors:  D A Benson; I Karsch-Mizrachi; D J Lipman; J Ostell; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 4.  SYFPEITHI: database for MHC ligands and peptide motifs.

Authors:  H Rammensee; J Bachmann; N P Emmerich; O A Bachor; S Stevanović
Journal:  Immunogenetics       Date:  1999-11       Impact factor: 2.846

Review 5.  Conservation and diversification of MHC class I and its related molecules in vertebrates.

Authors:  K Hashimoto; K Okamura; H Yamaguchi; M Ototake; T Nakanishi; Y Kurosawa
Journal:  Immunol Rev       Date:  1999-02       Impact factor: 12.988

6.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

7.  GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support.

Authors:  M Rebhan; V Chalifa-Caspi; J Prilusky; D Lancet
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

Review 8.  Genatlas database, genes and development defects.

Authors:  J Frézal
Journal:  C R Acad Sci III       Date:  1998-10

9.  A roadmap for HLA-DR peptide binding specificities.

Authors:  G Chelvanayagam
Journal:  Hum Immunol       Date:  1997-12       Impact factor: 2.850

10.  MHCPEP, a database of MHC-binding peptides: update 1997.

Authors:  V Brusic; G Rudy; L C Harrison
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971
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  10 in total

1.  Predicting MHC class I epitopes in large datasets.

Authors:  Kirsten Roomp; Iris Antes; Thomas Lengauer
Journal:  BMC Bioinformatics       Date:  2010-02-17       Impact factor: 3.169

2.  AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data.

Authors:  Christopher P Toseland; Debra J Clayton; Helen McSparron; Shelley L Hemsley; Martin J Blythe; Kelly Paine; Irini A Doytchinova; Pingping Guan; Channa K Hattotuwagama; Darren R Flower
Journal:  Immunome Res       Date:  2005-10-06

3.  SuperHapten: a comprehensive database for small immunogenic compounds.

Authors:  Stefan Günther; Dorothea Hempel; Mathias Dunkel; Kristian Rother; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2006-11-07       Impact factor: 16.971

4.  An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities.

Authors:  Muthuraman Sathiamurthy; Bjoern Peters; Huynh-Hoa Bui; John Sidney; John Mokili; Stephen S Wilson; Ward Fleri; Deborah L McGuinness; Philip E Bourne; Alessandro Sette
Journal:  Immunome Res       Date:  2005-09-20

5.  HLA class I supertypes: a revised and updated classification.

Authors:  John Sidney; Bjoern Peters; Nicole Frahm; Christian Brander; Alessandro Sette
Journal:  BMC Immunol       Date:  2008-01-22       Impact factor: 3.615

Review 6.  An Introduction to B-Cell Epitope Mapping and In Silico Epitope Prediction.

Authors:  Lenka Potocnakova; Mangesh Bhide; Lucia Borszekova Pulzova
Journal:  J Immunol Res       Date:  2016-12-29       Impact factor: 4.818

7.  HLA3D: an integrated structure-based computational toolkit for immunotherapy.

Authors:  Xingyu Li; Xue Lin; Xueyin Mei; Pin Chen; Anna Liu; Weicheng Liang; Shan Chang; Jian Li
Journal:  Brief Bioinform       Date:  2022-05-13       Impact factor: 11.622

8.  EpicCapo: epitope prediction using combined information of amino acid pairwise contact potentials and HLA-peptide contact site information.

Authors:  Thammakorn Saethang; Osamu Hirose; Ingorn Kimkong; Vu Anh Tran; Xuan Tho Dang; Lan Anh T Nguyen; Tu Kien T Le; Mamoru Kubo; Yoichi Yamada; Kenji Satou
Journal:  BMC Bioinformatics       Date:  2012-11-24       Impact factor: 3.169

9.  MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes.

Authors:  Sneh Lata; Manoj Bhasin; Gajendra P S Raghava
Journal:  BMC Res Notes       Date:  2009-04-20

10.  Novel peptide marker corresponding to salivary protein gSG6 potentially identifies exposure to Anopheles bites.

Authors:  Anne Poinsignon; Sylvie Cornelie; Montserrat Mestres-Simon; Alessandra Lanfrancotti; Marie Rossignol; Denis Boulanger; Badara Cisse; Cheikh Sokhna; Bruno Arcà; François Simondon; Franck Remoue
Journal:  PLoS One       Date:  2008-06-25       Impact factor: 3.240
  10 in total

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