Literature DB >> 9399875

Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.

T Heinemeyer1, E Wingender, I Reuter, H Hermjakob, A E Kel, O V Kel, E V Ignatieva, E A Ananko, O A Podkolodnaya, F A Kolpakov, N L Podkolodny, N A Kolchanov.   

Abstract

TRANSFAC, TRRD (Transcription Regulatory Region Database) and COMPEL are databases which store information about transcriptional regulation in eukaryotic cells. The three databases provide distinct views on the components involved in transcription: transcription factors and their binding sites and binding profiles (TRANSFAC), the regulatory hierarchy of whole genes (TRRD), and the structural and functional properties of composite elements (COMPEL). The quantitative and qualitative changes of all three databases and connected programs are described. The databases are accessible via WWW:http://transfac.gbf.de/TRANSFAC orhttp://www.bionet.nsc.ru/TRRD

Mesh：

Substances：

Year:  1998        PMID： 9399875      PMCID： PMC147251          DOI： 10.1093/nar/26.1.362

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  12 in total

1.  SRS: information retrieval system for molecular biology data banks.

Authors:  T Etzold; A Ulyanov; P Argos
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

2.  Finding protein-binding sites in DNA sequences: the next generation.

Authors:  K Frech; K Quandt; T Werner
Journal:  Trends Biochem Sci       Date:  1997-03       Impact factor: 13.807

3.  TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.

Authors:  E Wingender; A E Kel; O V Kel; H Karas; T Heinemeyer; P Dietze; R Knüppel; A G Romaschenko; N A Kolchanov
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

4.  FlyBase: a Drosophila database. The FlyBase consortium.

Authors:  W M Gelbart; M Crosby; B Matthews; W P Rindone; J Chillemi; S Russo Twombly; D Emmert; M Ashburner; R A Drysdale; E Whitfield; G H Millburn; A de Grey; T Kaufman; K Matthews; D Gilbert; V Strelets; C Tolstoshev
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

5.  Compilation and analysis of eukaryotic POL II promoter sequences.

Authors:  P Bucher; E N Trifonov
Journal:  Nucleic Acids Res       Date:  1986-12-22       Impact factor: 16.971

6.  Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

Authors:  O G Berg; P H von Hippel
Journal:  J Mol Biol       Date:  1987-02-20       Impact factor: 5.469

7.  Computer tool FUNSITE for analysis of eukaryotic regulatory genomic sequences.

Authors:  A E Kel; Y V Kondrakhin; O V Kel; A G Romashenko; E Wingender; L Milanesi; N A Kolchanov
Journal:  Proc Int Conf Intell Syst Mol Biol       Date:  1995

8.  A compilation of composite regulatory elements affecting gene transcription in vertebrates.

Authors:  O V Kel; A G Romaschenko; A E Kel; E Wingender; N A Kolchanov
Journal:  Nucleic Acids Res       Date:  1995-10-25       Impact factor: 16.971

9.  TRANSFAC: a database on transcription factors and their DNA binding sites.

Authors:  E Wingender; P Dietze; H Karas; R Knüppel
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

10.  MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data.

Authors:  K Quandt; K Frech; H Karas; E Wingender; T Werner
Journal:  Nucleic Acids Res       Date:  1995-12-11       Impact factor: 16.971
View more
  476 in total

1.  The EMBL nucleotide sequence database.

Authors:  W Baker; A van den Broek; E Camon; P Hingamp; P Sterk; G Stoesser; M A Tuli
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation.

Authors:  O V Kel-Margoulis; A G Romashchenko; N A Kolchanov; E Wingender; A E Kel
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  Asymmetric and node-specific nodal expression patterns are controlled by two distinct cis-acting regulatory elements.

Authors:  D P Norris; E J Robertson
Journal:  Genes Dev       Date:  1999-06-15       Impact factor: 11.361

4.  The TRANSFAC system on gene expression regulation.

Authors:  E Wingender; X Chen; E Fricke; R Geffers; R Hehl; I Liebich; M Krull; V Matys; H Michael; R Ohnhäuser; M Prüss; F Schacherer; S Thiele; S Urbach
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  Genetic restriction of HIV-1 pathogenesis to AIDS by promoter alleles of IL10.

Authors:  H D Shin; C Winkler; J C Stephens; J Bream; H Young; J J Goedert; T R O'Brien; D Vlahov; S Buchbinder; J Giorgi; C Rinaldo; S Donfield; A Willoughby; S J O'Brien; M W Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

6.  Transcription in archaea.

Authors:  N C Kyrpides; C A Ouzounis
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

7.  Expression of tandem invertase genes associated with sexual and vegetative growth cycles in potato.

Authors:  A L Maddison; P E Hedley; R C Meyer; N Aziz; D Davidson; G C Machray
Journal:  Plant Mol Biol       Date:  1999-12       Impact factor: 4.076

8.  Periodical distribution of transcription factor sites in promoter regions and connection with chromatin structure.

Authors:  I Ioshikhes; E N Trifonov; M Q Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

9.  A comparison of in vivo and in vitro DNA-binding specificities suggests a new model for homeoprotein DNA binding in Drosophila embryos.

Authors:  A Carr; M D Biggin
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

10.  Predicting regulons and their cis-regulatory motifs by comparative genomics.

Authors:  A Manson McGuire; G M Church
Journal:  Nucleic Acids Res       Date:  2000-11-15       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.