Literature DB >> 9066261

Finding protein-binding sites in DNA sequences: the next generation.

K Frech1, K Quandt, T Werner.   

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Year:  1997        PMID： 9066261     DOI： 10.1016/s0968-0004(97)01006-2

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN： 0968-0004            Impact factor:   13.807


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  12 in total

1.  Integrated functional and bioinformatics approach for the identification and experimental verification of RNA signals: application to HIV-1 INS.

Authors:  Horst Wolff; Ruth Brack-Werner; Markus Neumann; Thomas Werner; Ralf Schneider
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

2.  Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.

Authors:  Giulio Pavesi; Paolo Mereghetti; Giancarlo Mauri; Graziano Pesole
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

3.  Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.

Authors:  T Heinemeyer; E Wingender; I Reuter; H Hermjakob; A E Kel; O V Kel; E V Ignatieva; E A Ananko; O A Podkolodnaya; F A Kolpakov; N L Podkolodny; N A Kolchanov
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

4.  Toucan: deciphering the cis-regulatory logic of coregulated genes.

Authors:  Stein Aerts; Gert Thijs; Bert Coessens; Mik Staes; Yves Moreau; Bart De Moor
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

5.  Novel computational analysis of protein binding array data identifies direct targets of Nkx2.2 in the pancreas.

Authors:  Jonathon T Hill; Keith R Anderson; Teresa L Mastracci; Klaus H Kaestner; Lori Sussel
Journal:  BMC Bioinformatics       Date:  2011-02-25       Impact factor: 3.169

6.  Validation of skeletal muscle cis-regulatory module predictions reveals nucleotide composition bias in functional enhancers.

Authors:  Andrew T Kwon; Alice Yi Chou; David J Arenillas; Wyeth W Wasserman
Journal:  PLoS Comput Biol       Date:  2011-12-01       Impact factor: 4.475

7.  Unraveling transcriptional control and cis-regulatory codes using the software suite GeneACT.

Authors:  Tom Hiu Cheung; Yin Lam Kwan; Micah Hamady; Xuedong Liu
Journal:  Genome Biol       Date:  2006-10-25       Impact factor: 13.583

8.  PromoterPlot: a graphical display of promoter similarities by pattern recognition.

Authors:  Alessandro Di Cara; Karsten Schmidt; Brian A Hemmings; Edward J Oakeley
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  Optimizing the GATA-3 position weight matrix to improve the identification of novel binding sites.

Authors:  Soumyadeep Nandi; Ilya Ioshikhes
Journal:  BMC Genomics       Date:  2012-08-22       Impact factor: 3.969

10.  Wide-scale analysis of human functional transcription factor binding reveals a strong bias towards the transcription start site.

Authors:  Yuval Tabach; Ran Brosh; Yossi Buganim; Anat Reiner; Or Zuk; Assif Yitzhaky; Mark Koudritsky; Varda Rotter; Eytan Domany
Journal:  PLoS One       Date:  2007-08-29       Impact factor: 3.240
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