Literature DB >> 8594589

TRANSFAC: a database on transcription factors and their DNA binding sites.

E Wingender1, P Dietze, H Karas, R Knüppel.   

Abstract

TRANSFAC is a database about eukaryotic transcription regulating DNA sequence elements and the transcription factors binding to and acting through them. This report summarizes the present status of this database and accompanying retrieval tools.

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Substances：

Year:  1996        PMID： 8594589      PMCID： PMC145586          DOI： 10.1093/nar/24.1.238

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  14 in total

Review 1.  Eukaryotic transcription factors.

Authors:  D S Latchman
Journal:  Biochem J       Date:  1990-09-01       Impact factor: 3.857

2.  TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins.

Authors:  R Knüppel; P Dietze; W Lehnberg; K Frech; E Wingender
Journal:  J Comput Biol       Date:  1994       Impact factor: 1.479

Review 3.  A relational database of transcription factors.

Authors:  D Ghosh
Journal:  Nucleic Acids Res       Date:  1990-04-11       Impact factor: 16.971

4.  A dictionary of transcription control sequences.

Authors:  J Locker; G Buzard
Journal:  DNA Seq       Date:  1990

Review 5.  Eukaryotic transcriptional regulatory proteins.

Authors:  P F Johnson; S L McKnight
Journal:  Annu Rev Biochem       Date:  1989       Impact factor: 23.643

Review 6.  Compilation of transcription regulating proteins.

Authors:  E Wingender
Journal:  Nucleic Acids Res       Date:  1988-03-25       Impact factor: 16.971

7.  Computer-assisted prediction, classification, and delimitation of protein binding sites in nucleic acids.

Authors:  K Frech; G Herrmann; T Werner
Journal:  Nucleic Acids Res       Date:  1993-04-11       Impact factor: 16.971

8.  Transforming a set of biological flat file libraries to a fast access network.

Authors:  T Etzold; P Argos
Journal:  Comput Appl Biosci       Date:  1993-02

9.  SRS--an indexing and retrieval tool for flat file data libraries.

Authors:  T Etzold; P Argos
Journal:  Comput Appl Biosci       Date:  1993-02

10.  MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data.

Authors:  K Quandt; K Frech; H Karas; E Wingender; T Werner
Journal:  Nucleic Acids Res       Date:  1995-12-11       Impact factor: 16.971
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  411 in total

1.  TRANSFAC: an integrated system for gene expression regulation.

Authors:  E Wingender; X Chen; R Hehl; H Karas; I Liebich; V Matys; T Meinhardt; M Prüss; I Reuter; F Schacherer
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The TRANSFAC system on gene expression regulation.

Authors:  E Wingender; X Chen; E Fricke; R Geffers; R Hehl; I Liebich; M Krull; V Matys; H Michael; R Ohnhäuser; M Prüss; F Schacherer; S Thiele; S Urbach
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

3.  A human mitochondrial transcription factor is related to RNA adenine methyltransferases and binds S-adenosylmethionine.

Authors:  Vicki McCulloch; Bonnie L Seidel-Rogol; Gerald S Shadel
Journal:  Mol Cell Biol       Date:  2002-02       Impact factor: 4.272

4.  Discovery of regulatory elements by a computational method for phylogenetic footprinting.

Authors:  Mathieu Blanchette; Martin Tompa
Journal:  Genome Res       Date:  2002-05       Impact factor: 9.043

5.  Deregulation of Rb-E2F1 axis causes chromosomal instability by engaging the transactivation function of Cdc20-anaphase-promoting complex/cyclosome.

Authors:  Somsubhra Nath; Abhishek Chowdhury; Sanjib Dey; Anirban Roychoudhury; Abira Ganguly; Dibyendu Bhattacharyya; Susanta Roychoudhury
Journal:  Mol Cell Biol       Date:  2014-11-03       Impact factor: 4.272

6.  Luman, a new member of the CREB/ATF family, binds to herpes simplex virus VP16-associated host cellular factor.

Authors:  R Lu; P Yang; P O'Hare; V Misra
Journal:  Mol Cell Biol       Date:  1997-09       Impact factor: 4.272

7.  Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites.

Authors:  Gregory E Crawford; Ingeborg E Holt; James C Mullikin; Denise Tai; Robert Blakesley; Gerard Bouffard; Alice Young; Catherine Masiello; Eric D Green; Tyra G Wolfsberg; Francis S Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

8.  The phylogenetic diversity of eukaryotic transcription.

Authors:  Richard M R Coulson; Christos A Ouzounis
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

9.  Mulan: multiple-sequence alignment to predict functional elements in genomic sequences.

Authors:  Gabriela G Loots; Ivan Ovcharenko
Journal:  Methods Mol Biol       Date:  2007

Review 10.  Implications of adiponectin in linking metabolism to testicular function.

Authors:  Luc J Martin
Journal:  Endocrine       Date:  2013-11-28       Impact factor: 3.633
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