Literature DB >> 11752337

tGRAP, the G-protein coupled receptors mutant database.

Oyvind Edvardsen1, Anne Lise Reiersen, Margot W Beukers, Kurt Kristiansen.   

Abstract

The searchable mutant database tGRAP (previously called tinyGRAP) at the University of Tromsø contains data on mutated G-protein coupled receptors (GPCRs). All data have been extracted from scientific papers and entered manually into the database. The current version of the tGRAP mutant database (tGRAP.uit.no, release 10, April 2001) contains around 10 500 mutants extracted from almost 1400 research papers containing mutant data on five families of GPCRs, i.e. Family A, rhodopsin-like; Family B, secretin-like; Family C, metabotropic glutamate-like; Family D, pheromone; Family E, cAMP receptors. A query form provides rapid and simple access to relevant mutant information. In addition to this query form, a tool that enables the user to access mutation data via sequence alignments has been introduced. The ability to access mutant data from such alignments increases the usefulness of the mutant database and facilitates comparison of mutagenesis data between receptors. Moreover, this tool allows the construction of tailor-made sequence alignment views from any combination of receptors belonging to the same class. The database is available at http://tGRAP.uit.no/.

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Year:  2002        PMID: 11752337      PMCID: PMC99129          DOI: 10.1093/nar/30.1.361

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  Visualisation and integration of G protein-coupled receptor related information help the modelling: description and applications of the Viseur program.

Authors:  F Campagne; R Jestin; J L Reversat; J M Bernassau; B Maigret
Journal:  J Comput Aided Mol Des       Date:  1999-11       Impact factor: 3.686

Review 2.  TinyGRAP database: a bioinformatics tool to mine G-protein-coupled receptor mutant data.

Authors:  M W Beukers; I Kristiansen; A P IJzerman; I Edvardsen
Journal:  Trends Pharmacol Sci       Date:  1999-12       Impact factor: 14.819

3.  Crystal structure of rhodopsin: A G protein-coupled receptor.

Authors:  K Palczewski; T Kumasaka; T Hori; C A Behnke; H Motoshima; B A Fox; I Le Trong; D C Teller; T Okada; R E Stenkamp; M Yamamoto; M Miyano
Journal:  Science       Date:  2000-08-04       Impact factor: 47.728

4.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

5.  GPCRDB: an information system for G protein-coupled receptors.

Authors:  F Horn; J Weare; M W Beukers; S Hörsch; A Bairoch; W Chen; O Edvardsen; F Campagne; G Vriend
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

6.  Online Mendelian Inheritance in Man (OMIM).

Authors:  A Hamosh; A F Scott; J Amberger; D Valle; V A McKusick
Journal:  Hum Mutat       Date:  2000       Impact factor: 4.878

7.  A database of mutants and effects of site-directed mutagenesis experiments on G protein-coupled receptors.

Authors:  K Kristiansen; S G Dahl; O Edvardsen
Journal:  Proteins       Date:  1996-09

8.  GCRDb: a G-protein-coupled receptor database.

Authors:  L F Kolakowski
Journal:  Receptors Channels       Date:  1994
  8 in total
  8 in total

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Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

Review 2.  Integrating structural and mutagenesis data to elucidate GPCR ligand binding.

Authors:  Christian Munk; Kasper Harpsøe; Alexander S Hauser; Vignir Isberg; David E Gloriam
Journal:  Curr Opin Pharmacol       Date:  2016-07-29       Impact factor: 5.547

3.  TMFunction: database for functional residues in membrane proteins.

Authors:  M Michael Gromiha; Yukimitsu Yabuki; M Xavier Suresh; A Mary Thangakani; Makiko Suwa; Kazuhiko Fukui
Journal:  Nucleic Acids Res       Date:  2008-10-08       Impact factor: 16.971

4.  GPCRDB: information system for G protein-coupled receptors.

Authors:  Bas Vroling; Marijn Sanders; Coos Baakman; Annika Borrmann; Stefan Verhoeven; Jan Klomp; Laerte Oliveira; Jacob de Vlieg; Gert Vriend
Journal:  Nucleic Acids Res       Date:  2010-11-02       Impact factor: 16.971

5.  Automatic extraction of protein point mutations using a graph bigram association.

Authors:  Lawrence C Lee; Florence Horn; Fred E Cohen
Journal:  PLoS Comput Biol       Date:  2007-02-02       Impact factor: 4.475

6.  Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base.

Authors:  Lucy Skrabanek; Marta Murcia; Michel Bouvier; Lakshmi Devi; Susan R George; Martin J Lohse; Graeme Milligan; Richard Neubig; Krzysztof Palczewski; Marc Parmentier; Jean-Philippe Pin; Gerrit Vriend; Jonathan A Javitch; Fabien Campagne; Marta Filizola
Journal:  BMC Bioinformatics       Date:  2007-05-30       Impact factor: 3.169

7.  Lower rate of genomic variation identified in the trans-membrane domain of monoamine sub-class of Human G-Protein Coupled Receptors: the Human GPCR-DB Database.

Authors:  Claes Wahlestedt; Anthony J Brookes; Salim Mottagui-Tabar
Journal:  BMC Genomics       Date:  2004-12-04       Impact factor: 3.969

8.  Structure-Based Sequence Alignment of the Transmembrane Domains of All Human GPCRs: Phylogenetic, Structural and Functional Implications.

Authors:  Vaclav Cvicek; William A Goddard; Ravinder Abrol
Journal:  PLoS Comput Biol       Date:  2016-03-30       Impact factor: 4.475

  8 in total

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