Literature DB >> 9399825

The tmRNA database (tmRDB).

C Zwieb1, N Larsen, J Wower.   

Abstract

This first release of the tmRNA database (tmRDB) contains 19 tmRNA sequences, a tmRNA sequence alignment with emphasis of base pairs that are supported by comparative sequence analysis, and a tabulation of tmRNA-encoded tag peptides. The tmRNADB also offers an RNA secondary structure diagram of the Escherichia coli tmRNA, as well as PDB-formatted coordinates for three-dimensional modeling. The data are available on the World Wide Web at http://www.uthct. edu/tmRDB/tmRDB.html

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Year:  1998        PMID： 9399825      PMCID： PMC147220          DOI： 10.1093/nar/26.1.166

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  8 in total

1.  SRP-RNA sequence alignment and secondary structure.

Authors:  N Larsen; C Zwieb
Journal:  Nucleic Acids Res       Date:  1991-01-25       Impact factor: 16.971

2.  Phylogenetic comparative analysis of RNA structure on Macintosh computers.

Authors:  J W Brown
Journal:  Comput Appl Biosci       Date:  1991-07

Review 3.  Getting closer to an understanding of the three-dimensional structure of ribosomal RNA.

Authors:  F Mueller; T Döring; T Erdemir; B Greuer; N Jünke; M Osswald; J Rinke-Appel; K Stade; S Thamm; R Brimacombe
Journal:  Biochem Cell Biol       Date:  1995 Nov-Dec       Impact factor: 3.626

4.  Phylogenetic analysis of tmRNA secondary structure.

Authors:  K P Williams; D P Bartel
Journal:  RNA       Date:  1996-12       Impact factor: 4.942

5.  ALMA, an editor for large sequence alignments.

Authors:  S Thirup; N E Larsen
Journal:  Proteins       Date:  1990

6.  Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA.

Authors:  K C Keiler; P R Waller; R T Sauer
Journal:  Science       Date:  1996-02-16       Impact factor: 47.728

7.  Probing the structure of the Escherichia coli 10Sa RNA (tmRNA).

Authors:  B Felden; H Himeno; A Muto; J P McCutcheon; J F Atkins; R F Gesteland
Journal:  RNA       Date:  1997-01       Impact factor: 4.942

8.  Characterization of 10S RNA: a new stable rna molecule from Escherichia coli.

Authors:  B K Ray; D Apirion
Journal:  Mol Gen Genet       Date:  1979-07-02
  8 in total
  2 in total

1.  Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome.

Authors:  Sukhjit Kaur; Reynald Gillet; Wen Li; Richard Gursky; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-20       Impact factor: 11.205

2.  Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches.

Authors:  B Felden; K Hanawa; J F Atkins; H Himeno; A Muto; R F Gesteland; J A McCloskey; P F Crain
Journal:  EMBO J       Date:  1998-06-01       Impact factor: 11.598
  2 in total

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