Literature DB >> 1717117

Phylogenetic comparative analysis of RNA structure on Macintosh computers.

J W Brown1.   

Abstract

A Macintosh Hypertalk program (Hypercard 'stack') for use in phylogenetic comparative analysis of RNA structure is described. The program identifies covariations and compensatory changes in RNA sequence alignments, for use in the construction of secondary structure models or the identification of tertiary interactions. The results of an analysis are presented either as a list of positions in the alignment which covary, or as a 2-dimensional matrix in which potential helices in the secondary structure appear as diagonal patterns.

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Year:  1991        PMID： 1717117     DOI： 10.1093/bioinformatics/7.3.391

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  8 in total

1.  New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.

Authors:  J K Harris; E S Haas; D Williams; D N Frank; J W Brown
Journal:  RNA       Date:  2001-02       Impact factor: 4.942

2.  Comparative analysis of secondary structure of insect mitochondrial small subunit ribosomal RNA using maximum weighted matching.

Authors:  R D Page
Journal:  Nucleic Acids Res       Date:  2000-10-15       Impact factor: 16.971

3.  A new structural motif in the left terminal domain of large viroids identified by covariation analysis.

Authors:  Frank-Ulrich Gast
Journal:  Virus Genes       Date:  2003-01       Impact factor: 2.332

4.  Prediction of common folding structures of homologous RNAs.

Authors:  K Han; H J Kim
Journal:  Nucleic Acids Res       Date:  1993-03-11       Impact factor: 16.971

5.  The tmRNA database (tmRDB).

Authors:  C Zwieb; N Larsen; J Wower
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

6.  Intracellular localization and unique conserved sequences of three small nucleolar RNAs.

Authors:  N Selvamurugan; O H Joost; E S Haas; J W Brown; N J Galvin; G L Eliceiri
Journal:  Nucleic Acids Res       Date:  1997-04-15       Impact factor: 16.971

7.  Comparative analysis of ribonuclease P RNA structure in Archaea.

Authors:  E S Haas; D W Armbruster; B M Vucson; C J Daniels; J W Brown
Journal:  Nucleic Acids Res       Date:  1996-04-01       Impact factor: 16.971

8.  Structure and evolution of ribonuclease P RNA in Gram-positive bacteria.

Authors:  E S Haas; A B Banta; J K Harris; N R Pace; J W Brown
Journal:  Nucleic Acids Res       Date:  1996-12-01       Impact factor: 16.971
  8 in total

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