Literature DB >> 9399799

Genes and proteins of Escherichia coli K-12.

M Riley1.   

Abstract

GenProtEC is a database of Escherichia coli genes and their gene products, classified by type of function and physiological role and with citations to the literature for each. Also present are data on sequence similarities among E.coli proteins, representing groups of paralogous genes, with PAM values, percent identity of amino acids, length of alignment and percent aligned. GenProtEC can be accessed at the URL http://www.mbl.edu/html/ecoli.html

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Year:  1998        PMID: 9399799      PMCID: PMC147169          DOI: 10.1093/nar/26.1.54

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  5 in total

1.  Exhaustive matching of the entire protein sequence database.

Authors:  G H Gonnet; M A Cohen; S A Benner
Journal:  Science       Date:  1992-06-05       Impact factor: 47.728

2.  Protein evolution viewed through Escherichia coli protein sequences: introducing the notion of a structural segment of homology, the module.

Authors:  M Riley; B Labedan
Journal:  J Mol Biol       Date:  1997-05-23       Impact factor: 5.469

3.  The SWISS-PROT protein sequence data bank, recent developments.

Authors:  A Bairoch; B Boeckmann
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

4.  Gene products of Escherichia coli: sequence comparisons and common ancestries.

Authors:  B Labedan; M Riley
Journal:  Mol Biol Evol       Date:  1995-11       Impact factor: 16.240

Review 5.  Functions of the gene products of Escherichia coli.

Authors:  M Riley
Journal:  Microbiol Rev       Date:  1993-12
  5 in total
  15 in total

1.  EXProt: a database for proteins with an experimentally verified function.

Authors:  Björn M Ursing; Frank H J van Enckevort; Jack A M Leunissen; Roland J Siezen
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  Web-based visualization tools for bacterial genome alignments.

Authors:  L Florea; C Riemer; S Schwartz; Z Zhang; N Stojanovic; W Miller; M McClelland
Journal:  Nucleic Acids Res       Date:  2000-09-15       Impact factor: 16.971

Review 3.  Contribution of structural genomics to understanding the biology of Escherichia coli.

Authors:  Allan Matte; J Sivaraman; Irena Ekiel; Kalle Gehring; Zongchao Jia; Miroslaw Cygler
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

4.  Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarrays.

Authors:  Arnim Weber; Kirsten Jung
Journal:  J Bacteriol       Date:  2002-10       Impact factor: 3.490

5.  Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.

Authors:  M Pellegrini; E M Marcotte; M J Thompson; D Eisenberg; T O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

6.  Operons in Escherichia coli: genomic analyses and predictions.

Authors:  H Salgado; G Moreno-Hagelsieb; T F Smith; J Collado-Vides
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

7.  Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate.

Authors:  P J Pomposiello; M H Bennik; B Demple
Journal:  J Bacteriol       Date:  2001-07       Impact factor: 3.490

8.  Evolution of transcription factors and the gene regulatory network in Escherichia coli.

Authors:  M Madan Babu; Sarah A Teichmann
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

9.  Identification and mapping of self-assembling protein domains encoded by the Escherichia coli K-12 genome by use of lambda repressor fusions.

Authors:  Leonardo Mariño-Ramírez; Jonathan L Minor; Nicola Reading; James C Hu
Journal:  J Bacteriol       Date:  2004-03       Impact factor: 3.490

10.  ASAP, a systematic annotation package for community analysis of genomes.

Authors:  Jeremy D Glasner; Paul Liss; Guy Plunkett; Aaron Darling; Tejasvini Prasad; Michael Rusch; Alexis Byrnes; Michael Gilson; Bryan Biehl; Frederick R Blattner; Nicole T Perna
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

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