Literature DB >> 12218039

Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarrays.

Arnim Weber1, Kirsten Jung.   

Abstract

DNA macroarray technology was used to monitor early transcriptional alterations of Escherichia coli in response to an osmotic upshift imposed by the addition of 0.4 M NaCl. Altered mRNA levels of 152 genes were detected; 45 genes showed increased expression while the expression of the remaining 107 genes was reduced. Northern blot analysis of several selected genes differing in their relative expression values confirmed the results obtained by the array technology.

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Year:  2002        PMID： 12218039      PMCID： PMC135335          DOI： 10.1128/JB.184.19.5502-5507.2002

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  56 in total

1.  Global gene expression profiling in Escherichia coli K12. The effects of integration host factor.

Authors:  S M Arfin; A D Long; E T Ito; L Tolleri; M M Riehle; E S Paegle; G W Hatfield
Journal:  J Biol Chem       Date:  2000-09-22       Impact factor: 5.157

2.  Posttranscriptional osmotic regulation of the sigma(s) subunit of RNA polymerase in Escherichia coli.

Authors:  A Muffler; D D Traulsen; R Lange; R Hengge-Aronis
Journal:  J Bacteriol       Date:  1996-03       Impact factor: 3.490

3.  Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps.

Authors:  A Martinez; R Kolter
Journal:  J Bacteriol       Date:  1997-08       Impact factor: 3.490

4.  The complete genome sequence of Escherichia coli K-12.

Authors:  F R Blattner; G Plunkett; C A Bloch; N T Perna; V Burland; M Riley; J Collado-Vides; J D Glasner; C K Rode; G F Mayhew; J Gregor; N W Davis; H A Kirkpatrick; M A Goeden; D J Rose; B Mau; Y Shao
Journal:  Science       Date:  1997-09-05       Impact factor: 47.728

5.  Characterization of the sigma 38-dependent expression of a core Escherichia coli starvation gene, pexB.

Authors:  O L Lomovskaya; J P Kidwell; A Matin
Journal:  J Bacteriol       Date:  1994-07       Impact factor: 3.490

6.  Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media.

Authors:  H Tao; C Bausch; C Richmond; F R Blattner; T Conway
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

7.  Expression and role of the universal stress protein, UspA, of Escherichia coli during growth arrest.

Authors:  T Nyström; F C Neidhardt
Journal:  Mol Microbiol       Date:  1994-02       Impact factor: 3.501

8.  Proline transport and osmotic stress response in Escherichia coli K-12.

Authors:  S Grothe; R L Krogsrud; D J McClellan; J L Milner; J M Wood
Journal:  J Bacteriol       Date:  1986-04       Impact factor: 3.490

9.  osmY, a new hyperosmotically inducible gene, encodes a periplasmic protein in Escherichia coli.

Authors:  H H Yim; M Villarejo
Journal:  J Bacteriol       Date:  1992-06       Impact factor: 3.490

10.  Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo.

Authors:  S Cayley; B A Lewis; H J Guttman; M T Record
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469
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  47 in total

1.  Integrated transcriptomic and proteomic analysis of the physiological response of Escherichia coli O157:H7 Sakai to steady-state conditions of cold and water activity stress.

Authors:  Chawalit Kocharunchitt; Thea King; Kari Gobius; John P Bowman; Tom Ross
Journal:  Mol Cell Proteomics       Date:  2011-10-18       Impact factor: 5.911

2.  Osmotic regulation of the Escherichia coli bdm (biofilm-dependent modulation) gene by the RcsCDB His-Asp phosphorelay.

Authors:  Anne Francez-Charlot; Marie-Pierre Castanié-Cornet; Claude Gutierrez; Kaymeuang Cam
Journal:  J Bacteriol       Date:  2005-06       Impact factor: 3.490

3.  Escherichia coli pfs transcription: regulation and proposed roles in autoinducer-2 synthesis and purine excretion.

Authors:  Youngbae Kim; Chih M Lew; Jay D Gralla
Journal:  J Bacteriol       Date:  2006-09-01       Impact factor: 3.490

4.  In vitro analysis of the two-component system MtrB-MtrA from Corynebacterium glutamicum.

Authors:  Nina Möker; Jens Krämer; Gottfried Unden; Reinhard Krämer; Susanne Morbach
Journal:  J Bacteriol       Date:  2007-02-09       Impact factor: 3.490

5.  The biodiversity and ecology of Antarctic lakes: models for evolution.

Authors:  Johanna Laybourn-Parry; David A Pearce
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-12-29       Impact factor: 6.237

6.  Genome-wide transcriptional responses of Escherichia coli K-12 to continuous osmotic and heat stresses.

Authors:  Thusitha S Gunasekera; Laszlo N Csonka; Oleg Paliy
Journal:  J Bacteriol       Date:  2008-03-21       Impact factor: 3.490

7.  Protein localization in Escherichia coli cells: comparison of the cytoplasmic membrane proteins ProP, LacY, ProW, AqpZ, MscS, and MscL.

Authors:  Tatyana Romantsov; Andrew R Battle; Jenifer L Hendel; Boris Martinac; Janet M Wood
Journal:  J Bacteriol       Date:  2009-12-11       Impact factor: 3.490

8.  In vivo gene expression analysis identifies genes required for enhanced colonization of the mouse urinary tract by uropathogenic Escherichia coli strain CFT073 dsdA.

Authors:  Brian J Haugen; Shahaireen Pellett; Peter Redford; Holly L Hamilton; Paula L Roesch; Rodney A Welch
Journal:  Infect Immun       Date:  2006-10-30       Impact factor: 3.441

9.  Bioenergetics of the moderately halophilic bacterium Halobacillus halophilus: composition and regulation of the respiratory chain.

Authors:  Nadin Pade; Saskia Köcher; Markus Roeßler; Inga Hänelt; Volker Müller
Journal:  Appl Environ Microbiol       Date:  2013-04-12       Impact factor: 4.792

10.  Overproduction of exopolysaccharides by an Escherichia coli K-12 rpoS mutant in response to osmotic stress.

Authors:  Michael Ionescu; Shimshon Belkin
Journal:  Appl Environ Microbiol       Date:  2008-11-07       Impact factor: 4.792
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