Literature DB >> 11752251

EXProt: a database for proteins with an experimentally verified function.

Björn M Ursing1, Frank H J van Enckevort, Jack A M Leunissen, Roland J Siezen.   

Abstract

EXProt is a non-redundant protein database containing a selection of entries from genome annotation projects and public databases, aimed at including only proteins with an experimentally verified function. In EXProt release 2.0 we have collected entries from the Pseudomonas aeruginosa community annotation project (PseudoCAP), the Escherichia coli genome and proteome database (GenProtEC) and the translated coding sequences from the Prokaryotes division of EMBL nucleotide sequence database, which are described as having an experimentally verified function. Each entry in EXProt has a unique ID number and contains information about the species, amino acid sequence, functional annotation and, in most cases, links to references in MEDLINE/PubMed and to the entry in the original database. EXProt is indexed in SRS at CMBI (http://www.cmbi.kun.nl/srs/) and can be searched with BLAST and FASTA through the EXProt web page (http://www.cmbi.kun.nl/EXProt/).

Entities:  

Mesh：

Substances：

Year:  2002        PMID： 11752251      PMCID： PMC99155          DOI： 10.1093/nar/30.1.50

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  10 in total

1.  What we do not know about sequence analysis and sequence databases.

Authors:  P D Karp
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

2.  SMART: a web-based tool for the study of genetically mobile domains.

Authors:  J Schultz; R R Copley; T Doerks; C P Ponting; P Bork
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The Pfam protein families database.

Authors:  A Bateman; E Birney; R Durbin; S R Eddy; K L Howe; E L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  The EMBL nucleotide sequence database.

Authors:  G Stoesser; W Baker; A van den Broek; E Camon; M Garcia-Pastor; C Kanz; T Kulikova; V Lombard; R Lopez; H Parkinson; N Redaschi; P Sterk; P Stoehr; M A Tuli
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  EXProt--a database for EXPerimentally verified Protein functions.

Authors:  Björn M Ursing; Frank H J van Enckevort; Jack A M Leunissen; Roland J Siezen
Journal:  In Silico Biol       Date:  2002

6.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

7.  The PROSITE database, its status in 1999.

Authors:  K Hofmann; P Bucher; L Falquet; A Bairoch
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

8.  Database verification studies of SWISS-PROT and GenBank.

Authors:  P D Karp; S Paley; J Zhu
Journal:  Bioinformatics       Date:  2001-06       Impact factor: 6.937

9.  Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.

Authors:  C K Stover; X Q Pham; A L Erwin; S D Mizoguchi; P Warrener; M J Hickey; F S Brinkman; W O Hufnagle; D J Kowalik; M Lagrou; R L Garber; L Goltry; E Tolentino; S Westbrock-Wadman; Y Yuan; L L Brody; S N Coulter; K R Folger; A Kas; K Larbig; R Lim; K Smith; D Spencer; G K Wong; Z Wu; I T Paulsen; J Reizer; M H Saier; R E Hancock; S Lory; M V Olson
Journal:  Nature       Date:  2000-08-31       Impact factor: 49.962

10.  Genes and proteins of Escherichia coli K-12.

Authors:  M Riley
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971
  10 in total
  4 in total

1.  Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae.

Authors:  Michael P McLeod; Xiang Qin; Sandor E Karpathy; Jason Gioia; Sarah K Highlander; George E Fox; Thomas Z McNeill; Huaiyang Jiang; Donna Muzny; Leni S Jacob; Alicia C Hawes; Erica Sodergren; Rachel Gill; Jennifer Hume; Maggie Morgan; Guangwei Fan; Anita G Amin; Richard A Gibbs; Chao Hong; Xue-Jie Yu; David H Walker; George M Weinstock
Journal:  J Bacteriol       Date:  2004-09       Impact factor: 3.490

2.  An approach of orthology detection from homologous sequences under minimum evolution.

Authors:  Kyung Mo Kim; Samsun Sung; Gustavo Caetano-Anollés; Jae Yong Han; Heebal Kim
Journal:  Nucleic Acids Res       Date:  2008-08-01       Impact factor: 16.971

3.  Key challenges for the creation and maintenance of specialist protein resources.

Authors:  Gemma L Holliday; Amos Bairoch; Pantelis G Bagos; Arnaud Chatonnet; David J Craik; Robert D Finn; Bernard Henrissat; David Landsman; Gerard Manning; Nozomi Nagano; Claire O'Donovan; Kim D Pruitt; Neil D Rawlings; Milton Saier; Ramanathan Sowdhamini; Michael Spedding; Narayanaswamy Srinivasan; Gert Vriend; Patricia C Babbitt; Alex Bateman
Journal:  Proteins       Date:  2015-04-22

4.  3D-Fun: predicting enzyme function from structure.

Authors:  Marcin von Grotthuss; Dariusz Plewczynski; Gert Vriend; Leszek Rychlewski
Journal:  Nucleic Acids Res       Date:  2008-05-30       Impact factor: 16.971
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.