Literature DB >> 9016539

The PROSITE database, its status in 1997.

A Bairoch1, P Bucher, K Hofmann.   

Abstract

The PROSITE database consists of biologically significant patterns and profiles formulated in such a way that with appropriate computational tools it can help to determine to which known family of protein (if any) a new sequence belongs, or which known domain(s) it contains.

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Substances：

Year:  1997        PMID： 9016539      PMCID： PMC146371          DOI： 10.1093/nar/25.1.217

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  14 in total

1.  Construction of a dictionary of sequence motifs that characterize groups of related proteins.

Authors:  A Ogiwara; I Uchiyama; Y Seto; M Kanehisa
Journal:  Protein Eng       Date:  1992-09

2.  Automated assembly of protein blocks for database searching.

Authors:  S Henikoff; J G Henikoff
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

3.  Improving the sensitivity of the sequence profile method.

Authors:  R Lüthy; I Xenarios; P Bucher
Journal:  Protein Sci       Date:  1994-01       Impact factor: 6.725

4.  A flexible motif search technique based on generalized profiles.

Authors:  P Bucher; K Karplus; N Moeri; K Hofmann
Journal:  Comput Chem       Date:  1996-03

5.  Profile analysis.

Authors:  M Gribskov; R Lüthy; D Eisenberg
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

6.  Profile analysis: detection of distantly related proteins.

Authors:  M Gribskov; A D McLachlan; D Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

Review 7.  Sequence analysis by electronic mail server.

Authors:  S Henikoff
Journal:  Trends Biochem Sci       Date:  1993-07       Impact factor: 13.807

8.  The European Bioinformatics Institute (EBI) databases.

Authors:  P Rodriguez-Tomé; P J Stoehr; G N Cameron; T P Flores
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

9.  PROSITE: recent developments.

Authors:  A Bairoch; P Bucher
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

10.  A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.

Authors:  R D Appel; A Bairoch; D F Hochstrasser
Journal:  Trends Biochem Sci       Date:  1994-06       Impact factor: 13.807
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  164 in total

1.  An internal targeting signal directing proteins into the mitochondrial intermembrane space.

Authors:  K Diekert; G Kispal; B Guiard; R Lill
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-12       Impact factor: 11.205

2.  Cloning and analysis of the capsid morphogenesis genes of Pseudomonas aeruginosa bacteriophage D3: another example of protein chain mail?

Authors:  Z A Gilakjan; A M Kropinski
Journal:  J Bacteriol       Date:  1999-12       Impact factor: 3.490

3.  Cloning and expression of a Ralstonia eutropha HF39 gene mediating indigo formation in Escherichia coli.

Authors:  S Drewlo; C O Brämer; M Madkour; F Mayer; A Steinbüchel
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

4.  Prediction of a common beta-propeller catalytic domain for fructosyltransferases of different origin and substrate specificity.

Authors:  T Pons; L Hernández; F R Batista; G Chinea
Journal:  Protein Sci       Date:  2000-11       Impact factor: 6.725

5.  The precursor of the F1beta subunit of the ATP synthase is covalently modified upon binding to plant mitochondrial.

Authors:  E von Stedingk; P F Pavlov; V A Grinkevich; E Glaser
Journal:  Plant Mol Biol       Date:  1999-11       Impact factor: 4.076

6.  Cloning, sequencing, and expression of the pyruvate carboxylase gene in Lactococcus lactis subsp. lactis C2.

Authors:  H Wang; D J O'Sullivan; K A Baldwin; L L McKay
Journal:  Appl Environ Microbiol       Date:  2000-03       Impact factor: 4.792

7.  Characterization and role of the branched-chain aminotransferase (BcaT) isolated from Lactococcus lactis subsp. cremoris NCDO 763.

Authors:  M Yvon; E Chambellon; A Bolotin; F Roudot-Algaron
Journal:  Appl Environ Microbiol       Date:  2000-02       Impact factor: 4.792

8.  Cloning of beta-1,3-glucanases expressed during Cichorium somatic embryogenesis.

Authors:  S Helleboid; A Chapman; T Hendriks; D Inzé; J Vasseur; J L Hilbert
Journal:  Plant Mol Biol       Date:  2000-01       Impact factor: 4.076

Review 9.  Protein consensus sequence motifs.

Authors:  A Aitken
Journal:  Mol Biotechnol       Date:  1999-10       Impact factor: 2.695

10.  Identification of two residues in MCM5 critical for the assembly of MCM complexes and Stat1-mediated transcription activation in response to IFN-gamma.

Authors:  C J DaFonseca; F Shu; J J Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-06       Impact factor: 11.205
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