Literature DB >> 9396820

Use of an engineered ribozyme to produce a circular human exon.

S Mikheeva1, M Hakim-Zargar, D Carlson, K Jarrell.   

Abstract

We report the use of an engineered ribozyme to produce a circular human exon in vitro. Specifically, we have designed a derivative of a yeast self-splicing group II intron that is able to catalyze the formation of a circular exon encoding the first kringle domain (K1) of the human tissue plasminogen activator protein. We show that the circular K1 exon is formed with high fidelity in vitro. Furthermore, the system is designed such that the circular exon that is produced consists entirely of human exon sequence. Thus, our results demonstrate that all yeast exon sequences are dispensable for group II intron catalyzed inverse splicing. This is the first demonstration that an engineered ribozyme can be used to create a circular exon containing only human sequences, linked together at a precise desired ligation point. We expect these results to be generalizable, so that similar ribozymes can be designed to precisely create circular derivatives of any nucleotide sequence.

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Year:  1997        PMID: 9396820      PMCID: PMC147139          DOI: 10.1093/nar/25.24.5085

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  39 in total

1.  Initiation of protein synthesis by the eukaryotic translational apparatus on circular RNAs.

Authors:  C Y Chen; P Sarnow
Journal:  Science       Date:  1995-04-21       Impact factor: 47.728

Review 2.  Split genes and RNA splicing.

Authors:  P A Sharp
Journal:  Cell       Date:  1994-06-17       Impact factor: 41.582

3.  Synthesis of circular RNA in bacteria and yeast using RNA cyclase ribozymes derived from a group I intron of phage T4.

Authors:  E Ford; M Ares
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-12       Impact factor: 11.205

4.  Generation and characterization of circular Bacillus subtilis RNase P RNA; activation by RNase P protein.

Authors:  M Puttaraju; J A Beebe; S Niranjanakumari; M D Been; C A Fierke
Journal:  Nucleic Acids Symp Ser       Date:  1995

5.  Generation of nuclease resistant circular RNA decoys for HIV-Tat and HIV-Rev by autocatalytic splicing.

Authors:  M Puttaraju; M D Been
Journal:  Nucleic Acids Symp Ser       Date:  1995

Review 6.  The multiplicity of domains in proteins.

Authors:  R F Doolittle
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

7.  Two competing pathways for self-splicing by group II introns: a quantitative analysis of in vitro reaction rates and products.

Authors:  D L Daniels; W J Michels; A M Pyle
Journal:  J Mol Biol       Date:  1996-02-16       Impact factor: 5.469

8.  Inverse splicing of a group II intron.

Authors:  K A Jarrell
Journal:  Proc Natl Acad Sci U S A       Date:  1993-09-15       Impact factor: 11.205

9.  Splicing of a circular yeast pre-mRNA in vitro.

Authors:  C A Schindewolf; H Domdey
Journal:  Nucleic Acids Res       Date:  1995-04-11       Impact factor: 16.971

10.  Circular transcripts of the testis-determining gene Sry in adult mouse testis.

Authors:  B Capel; A Swain; S Nicolis; A Hacker; M Walter; P Koopman; P Goodfellow; R Lovell-Badge
Journal:  Cell       Date:  1993-06-04       Impact factor: 41.582

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  6 in total

1.  Non-homologous recombination mediated by Thermus aquaticus DNA polymerase I. Evidence supporting a copy choice mechanism.

Authors:  P G Zaphiropoulos
Journal:  Nucleic Acids Res       Date:  1998-06-15       Impact factor: 16.971

2.  Oligoribonucleotide circularization by 'template-mediated' ligation with T4 RNA ligase: synthesis of circular hammerhead ribozymes.

Authors:  L Wang; D E Ruffner
Journal:  Nucleic Acids Res       Date:  1998-05-15       Impact factor: 16.971

Review 3.  In vitro circularization of RNA.

Authors:  Sabine Müller; Bettina Appel
Journal:  RNA Biol       Date:  2016-09-26       Impact factor: 4.652

Review 4.  The design and synthesis of circular RNAs.

Authors:  Prisca Obi; Y Grace Chen
Journal:  Methods       Date:  2021-03-02       Impact factor: 3.608

Review 5.  RNA circularization strategies in vivo and in vitro.

Authors:  Sonja Petkovic; Sabine Müller
Journal:  Nucleic Acids Res       Date:  2015-02-06       Impact factor: 16.971

Review 6.  Circular RNA: Biosynthesis in vitro.

Authors:  Xinjie Chen; Yuan Lu
Journal:  Front Bioeng Biotechnol       Date:  2021-11-30
  6 in total

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