Literature DB >> 33662562

The design and synthesis of circular RNAs.

Prisca Obi1, Y Grace Chen2.   

Abstract

Circular RNAs (circRNAs) are a novel class of RNAs distinguished by their single-stranded, covalently-closed topology. Although initially perceived as rare byproducts of aberrant splicing, circRNAs are now recognized as ubiquitously expressed and functionally significant. These discoveries have led to a growing need for ways to model circRNAs in living cells to advance our understanding of their biogenesis, regulation, and function, and to adopt them as new technologies for application within research and medicine. In this review, we provide an updated summary of approaches used to produce circRNAs in vitro and in vivo, the latter of which has grown considerably in recent years. Given increased interest in the unique functions carried out by individual circRNAs, we further dedicate a section on how to customize synthesized circRNAs for specific biological roles. We focus on the most common applications, including designing circRNAs for protein delivery, to target miRNAs and proteins, to act as fluorescent reporters, and to modulate cellular immunity.
Copyright © 2021. Published by Elsevier Inc.

Entities:  

Keywords:  Backsplicing; CircRNA; CircRNA minigene; CircRNA translation; In vitro transcription; RNA synthesis

Mesh:

Substances:

Year:  2021        PMID: 33662562      PMCID: PMC8670866          DOI: 10.1016/j.ymeth.2021.02.020

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  132 in total

1.  Characterization of bacteriophage KVP40 and T4 RNA ligase 2.

Authors:  Shenmin Yin; C Kiong Ho; Eric S Miller; Stewart Shuman
Journal:  Virology       Date:  2004-02-05       Impact factor: 3.616

2.  Inverse splicing of a discontinuous pre-mRNA intron generates a circular exon in a HeLa cell nuclear extract.

Authors:  S Braun; H Domdey; K Wiebauer
Journal:  Nucleic Acids Res       Date:  1996-11-01       Impact factor: 16.971

3.  Group I permuted intron-exon (PIE) sequences self-splice to produce circular exons.

Authors:  M Puttaraju; M D Been
Journal:  Nucleic Acids Res       Date:  1992-10-25       Impact factor: 16.971

4.  Circular RNA oligonucleotides. Synthesis, nucleic acid binding properties, and a comparison with circular DNAs.

Authors:  S Wang; E T Kool
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

5.  Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

Authors:  Andranik Ivanov; Sebastian Memczak; Emanuel Wyler; Francesca Torti; Hagit T Porath; Marta R Orejuela; Michael Piechotta; Erez Y Levanon; Markus Landthaler; Christoph Dieterich; Nikolaus Rajewsky
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

Review 6.  Alternative splicing: a pivotal step between eukaryotic transcription and translation.

Authors:  Alberto R Kornblihtt; Ignacio E Schor; Mariano Alló; Gwendal Dujardin; Ezequiel Petrillo; Manuel J Muñoz
Journal:  Nat Rev Mol Cell Biol       Date:  2013-02-06       Impact factor: 94.444

Review 7.  In vitro circularization of RNA.

Authors:  Sabine Müller; Bettina Appel
Journal:  RNA Biol       Date:  2016-09-26       Impact factor: 4.652

8.  Use of Alu Element Containing Minigenes to Analyze Circular RNAs.

Authors:  Justin R Welden; Anna Pawluchin; Jacob van Doorn; Stefan Stamm
Journal:  J Vis Exp       Date:  2020-03-10       Impact factor: 1.355

9.  An Insulin-Sensitive Circular RNA that Regulates Lifespan in Drosophila.

Authors:  Carina Marianne Weigelt; Rohan Sehgal; Luke Stephen Tain; Jun Cheng; Jacqueline Eßer; André Pahl; Christoph Dieterich; Sebastian Grönke; Linda Partridge
Journal:  Mol Cell       Date:  2020-06-26       Impact factor: 17.970

10.  Design and application of circular RNAs with protein-sponge function.

Authors:  Silke Schreiner; Anna Didio; Lee-Hsueh Hung; Albrecht Bindereif
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

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  4 in total

1.  Engineering circular RNA for enhanced protein production.

Authors:  Robert Chen; Sean K Wang; Julia A Belk; Laura Amaya; Zhijian Li; Angel Cardenas; Brian T Abe; Chun-Kan Chen; Paul A Wender; Howard Y Chang
Journal:  Nat Biotechnol       Date:  2022-07-18       Impact factor: 68.164

Review 2.  Circular RNA: Biosynthesis in vitro.

Authors:  Xinjie Chen; Yuan Lu
Journal:  Front Bioeng Biotechnol       Date:  2021-11-30

Review 3.  Insight into LncRNA- and CircRNA-Mediated CeRNAs: Regulatory Network and Implications in Nasopharyngeal Carcinoma-A Narrative Literature Review.

Authors:  Senmiao Zhang; Yanling Li; Shuyu Xin; Li Yang; Mingjuan Jiang; Yujie Xin; Yiwei Wang; Jing Yang; Jianhong Lu
Journal:  Cancers (Basel)       Date:  2022-09-20       Impact factor: 6.575

4.  Synthetic Circular miR-21 Sponge as Tool for Lung Cancer Treatment.

Authors:  Ana R Rama; Francisco Quiñonero; Cristina Mesas; Consolación Melguizo; Jose Prados
Journal:  Int J Mol Sci       Date:  2022-03-09       Impact factor: 5.923

  4 in total

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