Literature DB >> 9370466

Water-coupled low-frequency modes of myoglobin and lysozyme observed by inelastic neutron scattering.

M Diehl1, W Doster, W Petry, H Schober.   

Abstract

Conformational changes of proteins often involve the relative motion of rigid structural domains. Normal mode analysis and molecular dynamics simulations of small globular proteins predict delocalized vibrations with frequencies below 20 cm(-1), which may be overdamped in solution due to solvent friction. In search of these modes, we have studied deuterium-exchanged myoglobin and lysozyme using inelastic neutron scattering in the low-frequency range at full and low hydration to modify the degree of damping. At room temperature, the hydrated samples exhibit a more pronounced quasielastic spectrum due to diffusive motions than the dehydrated samples. The analysis of the corresponding lineshapes suggests that water modifies mainly the amplitude, but not the characteristic time of fast protein motions. At low temperatures, in contrast, the dehydrated samples exhibit larger motional amplitudes than the hydrated ones. The excess scattering, culminating at 16 cm(-1), is suggested to reflect water-coupled librations of polar side chains that are depressed in the hydrated system by strong intermolecular hydrogen bonding. Both myoglobin and lysozyme exhibit ultra-low-frequency modes below 10 cm(-1) in the dry state, possibly related to the breathing modes predicted by harmonic analysis.

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Year:  1997        PMID: 9370466      PMCID: PMC1181174          DOI: 10.1016/S0006-3495(97)78301-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  22 in total

1.  Deoxymyoglobin studied by the conformational normal mode analysis. II. The conformational change upon oxygenation.

Authors:  Y Seno; N Go
Journal:  J Mol Biol       Date:  1990-11-05       Impact factor: 5.469

2.  Hydration-dependent far-infrared absorption in lysozyme detected using synchrotron radiation.

Authors:  K D Moeller; G P Williams; S Steinhauser; C Hirschmugl; J C Smith
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

3.  Dynamic instability of liquidlike motions in a globular protein observed by inelastic neutron scattering.

Authors: 
Journal:  Phys Rev Lett       Date:  1990-08-20       Impact factor: 9.161

4.  Low-frequency Raman spectra of lysozyme.

Authors:  L Genzel; F Keilmann; T P Martin; G Winterling; Y Yacoby; H Fröhlich; M W Makinen
Journal:  Biopolymers       Date:  1976-01       Impact factor: 2.505

5.  Hinge-bending motion in citrate synthase arising from normal mode calculations.

Authors:  O Marques; Y H Sanejouand
Journal:  Proteins       Date:  1995-12

6.  Collagen. An inelastic neutron-scattering study of low-frequency vibrational modes.

Authors:  C V Berney; V Renugopalakrishnan; R S Bhatnagar
Journal:  Biophys J       Date:  1987-08       Impact factor: 4.033

7.  Conformationally dependent low-frequency motions of proteins by laser Raman spectroscopy.

Authors:  K G Brown; S C Erfurth; E W Small; W L Peticolas
Journal:  Proc Natl Acad Sci U S A       Date:  1972-06       Impact factor: 11.205

8.  Low-frequency modes in the Raman spectra of proteins.

Authors:  P C Painter; L E Mosher; C Rhoads
Journal:  Biopolymers       Date:  1982-07       Impact factor: 2.505

9.  Structure of a complex between yeast hexokinase A and glucose. II. Detailed comparisons of conformation and active site configuration with the native hexokinase B monomer and dimer.

Authors:  W S Bennett; T A Steitz
Journal:  J Mol Biol       Date:  1980-06-25       Impact factor: 5.469

10.  Vibrational modes of hemoglobin in red blood cells.

Authors:  P Martel; P Calmettes; B Hennion
Journal:  Biophys J       Date:  1991-02       Impact factor: 4.033

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  35 in total

1.  Evolution of the internal dynamics of two globular proteins from dry powder to solution.

Authors:  J Pérez; J M Zanotti; D Durand
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

2.  Radially softening diffusive motions in a globular protein.

Authors:  S Dellerue; A J Petrescu; J C Smith; M C Bellissent-Funel
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

3.  On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.

Authors:  M M Teeter; A Yamano; B Stec; U Mohanty
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

4.  Solvent dependence of dynamic transitions in protein solutions.

Authors:  V Réat; R Dunn; M Ferrand; J L Finney; R M Daniel; J C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

5.  Dynamic transition associated with the thermal denaturation of a small Beta protein.

Authors:  Daniela Russo; Javier Pérez; Jean-Marc Zanotti; Michel Desmadril; Dominique Durand
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

6.  Picosecond internal dynamics of lysozyme as affected by thermal unfolding in nonaqueous environment.

Authors:  A De Francesco; M Marconi; S Cinelli; G Onori; A Paciaroni
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

7.  Adhesive-cohesive model for protein compressibility: an alternative perspective on stability.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-24       Impact factor: 11.205

8.  Protein flexibility and conformational state: a comparison of collective vibrational modes of wild-type and D96N bacteriorhodopsin.

Authors:  S E Whitmire; D Wolpert; A G Markelz; J R Hillebrecht; J Galan; R R Birge
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

9.  Effect of the environment on the protein dynamical transition: a neutron scattering study.

Authors:  Alessandro Paciaroni; Stefania Cinelli; Giuseppe Onori
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

10.  Dynamics of biological macromolecules: not a simple slaving by hydration water.

Authors:  S Khodadadi; J H Roh; A Kisliuk; E Mamontov; M Tyagi; S A Woodson; R M Briber; A P Sokolov
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

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