Literature DB >> 9321423

How did glycogen structure evolve to satisfy the requirement for rapid mobilization of glucose? A problem of physical constraints in structure building.

R Meléndez1, E Meléndez-Hevia, M Cascante.   

Abstract

Optimization of molecular design in cellular metabolism is a necessary condition for guaranteeing a good structure-function relationship. We have studied this feature in the design of glycogen by means of the mathematical model previously presented that describes glycogen structure and its optimization function [Meléndez-Hevia et al. (1993), Biochem J 295: 477-483]. Our results demonstrate that the structure of cellular glycogen is in good agreement with these principles. Because the stored glucose in glycogen must be ready to be used at any phase of its synthesis or degradation, the full optimization of glycogen structure must also imply the optimization of every intermediate stage in its formation. This case can be viewed as a molecular instance of the eye problem, a classical paradigm of natural selection which states that every step in the evolutionary formation of a functional structure must be functional. The glycogen molecule has a highly optimized structure for its metabolic function, but the optimization of the full molecule has meaning and can be understood only by taking into account the optimization of each intermediate stage in its formation.

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Year:  1997        PMID: 9321423     DOI: 10.1007/pl00006249

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  46 in total

1.  Studies on the metabolism of the protozoa. 6. The glycogens of the parasitic flagellates Trichomonas foetus and Trichomonas gallinae.

Authors:  D J MANNERS; J F RYLEY
Journal:  Biochem J       Date:  1955-03       Impact factor: 3.857

2.  The mechanism of carbohydrase action. 8. Structures of the muscle-phosphorylase limit dextrins of glycogen and amylopectin.

Authors:  G J WALKER; W J WHELAN
Journal:  Biochem J       Date:  1960-08       Impact factor: 3.857

3.  Comparative characterization of human and rat liver glycogen synthase.

Authors:  S A Westphal; F Q Nuttall
Journal:  Arch Biochem Biophys       Date:  1992-02-01       Impact factor: 4.013

4.  Theoretical approaches to the evolutionary optimization of glycolysis: thermodynamic and kinetic constraints.

Authors:  R Heinrich; F Montero; E Klipp; T G Waddell; E Meléndez-Hevia
Journal:  Eur J Biochem       Date:  1997-01-15

5.  Theoretical approaches to the evolutionary optimization of glycolysis--chemical analysis.

Authors:  E Meléndez-Hevia; T G Waddell; R Heinrich; F Montero
Journal:  Eur J Biochem       Date:  1997-03-01

6.  The sequential inactivation of glycogen phosphorylase and activation of glycogen synthetase in liver after the administration of glucose to mice and rats. The mechanism of the hepatic threshold to glucose.

Authors:  W Stalmans; H De Wulf; L Hue; H G Hers
Journal:  Eur J Biochem       Date:  1974-01-03

7.  The fine structure of glycogen from type IV glycogen-storage disease.

Authors:  C Mercier; W J Whelan
Journal:  Eur J Biochem       Date:  1970-11

8.  Evolutionary biology. The eye in a twinkling.

Authors:  R Dawkins
Journal:  Nature       Date:  1994-04-21       Impact factor: 49.962

9.  Rate-determining steps in the biosynthesis of glycogen in COS cells.

Authors:  A V Skurat; H L Peng; H Y Chang; J F Cannon; P J Roach
Journal:  Arch Biochem Biophys       Date:  1996-04-15       Impact factor: 4.013

10.  The game of the pentose phosphate cycle.

Authors:  E Meléndez-Hevia; A Isidoro
Journal:  J Theor Biol       Date:  1985-11-21       Impact factor: 2.691

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  19 in total

1.  The fractal structure of glycogen: A clever solution to optimize cell metabolism.

Authors:  R Meléndez; E Meléndez-Hevia; E I Canela
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

2.  Rat skeletal muscle glycogen degradation pathways reveal differential association of glycogen-related proteins with glycogen granules.

Authors:  Hongyang Xu; David Stapleton; Robyn M Murphy
Journal:  J Physiol Biochem       Date:  2015-04-15       Impact factor: 4.158

3.  Kinetic analysis of glycogen turnover: relevance to human brain 13C-NMR spectroscopy.

Authors:  Mauro DiNuzzo
Journal:  J Cereb Blood Flow Metab       Date:  2013-06-12       Impact factor: 6.200

4.  Quantitative assessment of human muscle glycogen granules size and number in subcellular locations during recovery from prolonged exercise.

Authors:  I Marchand; M Tarnopolsky; K B Adamo; J M Bourgeois; K Chorneyko; T E Graham
Journal:  J Physiol       Date:  2007-02-01       Impact factor: 5.182

5.  Physical constraints in the synthesis of glycogen that influence its structural homogeneity: a two-dimensional approach.

Authors:  R Meléndez; E Meléndez-Hevia; F Mas; J Mach; M Cascante
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

6.  Biochemistry and evolutionary biology: two disciplines that need each other?

Authors:  Athel Cornish-Bowden; Juli Pereto; Maria Luz Cardenas
Journal:  J Biosci       Date:  2014-03       Impact factor: 1.826

Review 7.  Glycogen and its metabolism: some new developments and old themes.

Authors:  Peter J Roach; Anna A Depaoli-Roach; Thomas D Hurley; Vincent S Tagliabracci
Journal:  Biochem J       Date:  2012-02-01       Impact factor: 3.857

8.  Reaction kinetics of substrate transglycosylation catalyzed by TreX of Sulfolobus solfataricus and effects on glycogen breakdown.

Authors:  Dang Hai Dang Nguyen; Jong-Tae Park; Jae-Hoon Shim; Phuong Lan Tran; Ershita Fitria Oktavina; Thi Lan Huong Nguyen; Sung-Jae Lee; Cheon-Seok Park; Dan Li; Sung-Hoon Park; David Stapleton; Jin-Sil Lee; Kwan-Hwa Park
Journal:  J Bacteriol       Date:  2014-03-07       Impact factor: 3.490

9.  Mechanistic Insights into Glucan Phosphatase Activity against Polyglucan Substrates.

Authors:  David A Meekins; Madushi Raththagala; Kyle D Auger; Benjamin D Turner; Diana Santelia; Oliver Kötting; Matthew S Gentry; Craig W Vander Kooi
Journal:  J Biol Chem       Date:  2015-07-31       Impact factor: 5.157

Review 10.  The dynamic life of the glycogen granule.

Authors:  Clara Prats; Terry E Graham; Jane Shearer
Journal:  J Biol Chem       Date:  2018-02-26       Impact factor: 5.157

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