Literature DB >> 4079448

The game of the pentose phosphate cycle.

E Meléndez-Hevia, A Isidoro.   

Abstract

Sugar rearrangement in the pentose phosphate cycle for transformation of six pentoses into five hexoses is analysed by abstraction to a mathematical model consisting of the resolution of a logical mathematical game of optimization. In the model, the problem is to arrive at five boxes containing six balls each, having started with six boxes containing five balls each, where boxes simulate the sugars and balls simulate the carbons in each. This is achieved by means of transferring two or three balls from any box to any other in each step, according to transketolase and transaldolase (or aldolase) mechanisms which account for sugar interconversions in the living cell. A hypothesis of simplicity is imposed in order to arrive at the objective with the least number of steps and with the least number of balls in the intermediary boxes. A symmetrical solution is obtained, demonstrating that this is the simplest solution, which is the procedure carried out by biological systems. The same treatment is applied for sugar rearrangement in the non-oxidative phase of the Calvin cycle in photosynthesis and the analysis of the "L-type" of pentose phosphate cycle is also treated, obtaining similar solutions in both cases, which allow us to make some physiological reflections.

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Year:  1985        PMID: 4079448     DOI: 10.1016/s0022-5193(85)80220-4

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  16 in total

1.  The fractal structure of glycogen: A clever solution to optimize cell metabolism.

Authors:  R Meléndez; E Meléndez-Hevia; E I Canela
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

2.  Activity and metabolic roles of the pentose phosphate cycle in several rat tissues.

Authors:  H Cabezas; R R Raposo; E Meléndez-Hevia
Journal:  Mol Cell Biochem       Date:  1999-11       Impact factor: 3.396

Review 3.  Rethinking glycolysis: on the biochemical logic of metabolic pathways.

Authors:  Arren Bar-Even; Avi Flamholz; Elad Noor; Ron Milo
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

Review 4.  How did glycogen structure evolve to satisfy the requirement for rapid mobilization of glucose? A problem of physical constraints in structure building.

Authors:  R Meléndez; E Meléndez-Hevia; M Cascante
Journal:  J Mol Evol       Date:  1997-10       Impact factor: 2.395

5.  The puzzle of the Krebs citric acid cycle: assembling the pieces of chemically feasible reactions, and opportunism in the design of metabolic pathways during evolution.

Authors:  E Meléndez-Hevia; T G Waddell; M Cascante
Journal:  J Mol Evol       Date:  1996-09       Impact factor: 2.395

6.  Fat synthesis in adipose tissue. An examination of stoichiometric constraints.

Authors:  D A Fell; J R Small
Journal:  Biochem J       Date:  1986-09-15       Impact factor: 3.857

7.  Optimization of molecular design in the evolution of metabolism: the glycogen molecule.

Authors:  E Meléndez-Hevia; T G Waddell; E D Shelton
Journal:  Biochem J       Date:  1993-10-15       Impact factor: 3.857

8.  Genetic-algorithm selection of a regulatory structure that directs flux in a simple metabolic model.

Authors:  A Gilman; J Ross
Journal:  Biophys J       Date:  1995-10       Impact factor: 4.033

9.  Synthetic non-oxidative glycolysis enables complete carbon conservation.

Authors:  Igor W Bogorad; Tzu-Shyang Lin; James C Liao
Journal:  Nature       Date:  2013-09-29       Impact factor: 49.962

10.  Design and analysis of synthetic carbon fixation pathways.

Authors:  Arren Bar-Even; Elad Noor; Nathan E Lewis; Ron Milo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-21       Impact factor: 11.205

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