Literature DB >> 10465745

The fractal structure of glycogen: A clever solution to optimize cell metabolism.

R Meléndez1, E Meléndez-Hevia, E I Canela.   

Abstract

Fractal objects are complex structures built with a simple procedure involving very little information. This has an obvious interest for living beings, because they are splendid examples of optimization to achieve the most efficient structure for a number of goals by means of the most economic way. The lung alveolar structure, the capillary network, and the structure of several parts of higher plant organization, such as ears, spikes, umbels, etc., are supposed to be fractals, and, in fact, mathematical functions based on fractal geometry algorithms can be developed to simulate them. However, the statement that a given biological structure is fractal should imply that the iterative process of its construction has a real biological meaning, i.e., that its construction in nature is achieved by means of a single genetic, enzymatic, or biophysical mechanism successively repeated; thus, such an iterative process should not be just an abstract mathematical tool to reproduce that object. This property has not been proven at present for any biological structure, because the mechanisms that build the objects mentioned above are unknown in detail. In this work, we present results that show that the glycogen molecule could be the first known real biological fractal structure.

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Year:  1999        PMID: 10465745      PMCID: PMC1300422          DOI: 10.1016/S0006-3495(99)76982-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

1.  A revision of the Meyer-Bernfeld model of glycogen and amylopectin.

Authors:  Z Gunja-Smith; J J. Marshall; C Mercier; E E. Smith; W J. Whelan
Journal:  FEBS Lett       Date:  1970-12-28       Impact factor: 4.124

Review 2.  Fractal geometry: a design principle for living organisms.

Authors:  E R Weibel
Journal:  Am J Physiol       Date:  1991-12

Review 3.  How did glycogen structure evolve to satisfy the requirement for rapid mobilization of glucose? A problem of physical constraints in structure building.

Authors:  R Meléndez; E Meléndez-Hevia; M Cascante
Journal:  J Mol Evol       Date:  1997-10       Impact factor: 2.395

4.  Simultaneous synthesis and degradation of rat liver glycogen. An in vivo nuclear magnetic resonance spectroscopic study.

Authors:  M David; W A Petit; M R Laughlin; R G Shulman; J E King; E J Barrett
Journal:  J Clin Invest       Date:  1990-08       Impact factor: 14.808

5.  Characteristics necessary for an interconvertible enzyme cascade to generate a highly sensitive response to an effector.

Authors:  M L Cárdenas; A Cornish-Bowden
Journal:  Biochem J       Date:  1989-01-15       Impact factor: 3.857

6.  Optimization of molecular design in the evolution of metabolism: the glycogen molecule.

Authors:  E Meléndez-Hevia; T G Waddell; E D Shelton
Journal:  Biochem J       Date:  1993-10-15       Impact factor: 3.857

7.  Structure of maltoheptaose by difference Fourier methods and a model for glycogen.

Authors:  E Goldsmith; S Sprang; R Fletterick
Journal:  J Mol Biol       Date:  1982-04-05       Impact factor: 5.469

8.  Proglycogen: a low-molecular-weight form of muscle glycogen.

Authors:  J Lomako; W M Lomako; W J Whelan
Journal:  FEBS Lett       Date:  1991-02-25       Impact factor: 4.124

Review 9.  A new look at the biogenesis of glycogen.

Authors:  M D Alonso; J Lomako; W M Lomako; W J Whelan
Journal:  FASEB J       Date:  1995-09       Impact factor: 5.191

10.  The game of the pentose phosphate cycle.

Authors:  E Meléndez-Hevia; A Isidoro
Journal:  J Theor Biol       Date:  1985-11-21       Impact factor: 2.691

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  28 in total

1.  Triacylglycerol mimetics regulate membrane interactions of glycogen branching enzyme: implications for therapy.

Authors:  Rafael Alvarez; Jesús Casas; David J López; Maitane Ibarguren; Ariadna Suari-Rivera; Silvia Terés; Francisca Guardiola-Serrano; Alexander Lossos; Xavier Busquets; Or Kakhlon; Pablo V Escribá
Journal:  J Lipid Res       Date:  2017-06-19       Impact factor: 5.922

2.  Phenotype consequences of myophosphorylase dysfunction: insights from the McArdle mouse model.

Authors:  Astrid Brull; Noemí de Luna; Albert Blanco-Grau; Alejandro Lucia; Miguel Angel Martin; Joaquin Arenas; Ramon Martí; Antoni L Andreu; Tomàs Pinós
Journal:  J Physiol       Date:  2015-05-18       Impact factor: 5.182

3.  Kinetic analysis of glycogen turnover: relevance to human brain 13C-NMR spectroscopy.

Authors:  Mauro DiNuzzo
Journal:  J Cereb Blood Flow Metab       Date:  2013-06-12       Impact factor: 6.200

4.  Discovery and Development of Small-Molecule Inhibitors of Glycogen Synthase.

Authors:  Buyun Tang; Mykhaylo S Frasinyuk; Vimbai M Chikwana; Krishna K Mahalingan; Cynthia A Morgan; Dyann M Segvich; Svitlana P Bondarenko; Galyna P Mrug; Przemyslaw Wyrebek; David S Watt; Anna A DePaoli-Roach; Peter J Roach; Thomas D Hurley
Journal:  J Med Chem       Date:  2020-03-23       Impact factor: 7.446

5.  Sensitive, nonradioactive assay of phosphorylase kinase through measurement of enhanced phosphorylase activity towards fluorogenic dextrin.

Authors:  Daichi Miyagawa; Yasushi Makino; Masaaki Sato
Journal:  J Biochem       Date:  2015-09-15       Impact factor: 3.387

Review 6.  Glycogen with short average chain length enhances bacterial durability.

Authors:  Liang Wang; Michael J Wise
Journal:  Naturwissenschaften       Date:  2011-08-02

Review 7.  Stranger in a strange land: roles of glycogen turnover in adipose tissue metabolism.

Authors:  Kathleen R Markan; Michael J Jurczak; Matthew J Brady
Journal:  Mol Cell Endocrinol       Date:  2009-08-22       Impact factor: 4.102

8.  Alteration of brain glycogen turnover in the conscious rat after 5h of prolonged wakefulness.

Authors:  Florence D Morgenthaler; Bernard R Lanz; Jean-Marie Petit; Hanne Frenkel; Pierre J Magistretti; Rolf Gruetter
Journal:  Neurochem Int       Date:  2009-03-09       Impact factor: 3.921

9.  Glycogen branching enzyme: a novel deltamethrin resistance-associated gene from Culex pipiens pallens.

Authors:  Yang Xu; Mifang Yang; Jing Sun; Jin Qian; Donghui Zhang; Yan Sun; Lei Ma; Changliang Zhu
Journal:  Parasitol Res       Date:  2008-05-13       Impact factor: 2.289

10.  On the evolutionary significance of the size and planarity of the proline ring.

Authors:  Jörn Behre; Roland Voigt; Ingo Althöfer; Stefan Schuster
Journal:  Naturwissenschaften       Date:  2012-09-15
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