Literature DB >> 9266169

Modeling transmembrane helical oligomers.

G R Dieckmann1, W F DeGrado.   

Abstract

Recently, methods for the analysis and design of water-soluble, oligomeric bundles of alpha helices, including coiled coils, have reached a high level of sophistication. These same methods may now be applied to transmembrane helical bundles. Studies of the transmembrane domains of glycophorin, phospholamban, and the M2 protein from influenza A virus exemplify this general approach.

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Year:  1997        PMID: 9266169     DOI: 10.1016/s0959-440x(97)80111-x

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  23 in total

1.  The role of the membrane-spanning domain sequence in glycoprotein-mediated membrane fusion.

Authors:  G M Taylor; D A Sanders
Journal:  Mol Biol Cell       Date:  1999-09       Impact factor: 4.138

2.  pH-dependent tetramerization and amantadine binding of the transmembrane helix of M2 from the influenza A virus.

Authors:  D Salom; B R Hill; J D Lear; W F DeGrado
Journal:  Biochemistry       Date:  2000-11-21       Impact factor: 3.162

3.  Computational design of a water-soluble analog of phospholamban.

Authors:  Avram M Slovic; Christopher M Summa; James D Lear; William F DeGrado
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

4.  The conformation of the pore region of the M2 proton channel depends on lipid bilayer environment.

Authors:  Krisna C Duong-Ly; Vikas Nanda; William F Degrado; Kathleen P Howard
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

5.  Rotational orientation of monomers within a designed homo-oligomer transmembrane helical bundle.

Authors:  Kathleen P Howard; Wei Liu; Evan Crocker; Vikas Nanda; James Lear; William F Degrado; Steven O Smith
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

6.  Helix-packing motifs in membrane proteins.

Authors:  R F S Walters; W F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-05       Impact factor: 11.205

7.  Janus model of the Na,K-ATPase beta-subunit transmembrane domain: distinct faces mediate alpha/beta assembly and beta-beta homo-oligomerization.

Authors:  Sonali P Barwe; Sanguk Kim; Sigrid A Rajasekaran; James U Bowie; Ayyappan K Rajasekaran
Journal:  J Mol Biol       Date:  2006-10-31       Impact factor: 5.469

Review 8.  Interaction and conformational dynamics of membrane-spanning protein helices.

Authors:  Dieter Langosch; Isaiah T Arkin
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

9.  Determination of the physiological dimer interface of the PhoQ sensor domain.

Authors:  Shalom D Goldberg; Cinque S Soto; Carey D Waldburger; William F Degrado
Journal:  J Mol Biol       Date:  2008-04-16       Impact factor: 5.469

10.  THGS: a web-based database of Transmembrane Helices in Genome Sequences.

Authors:  S A Fernando; P Selvarani; Soma Das; Ch Kiran Kumar; Sukanta Mondal; S Ramakumar; K Sekar
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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