Literature DB >> 12538897

Computational design of a water-soluble analog of phospholamban.

Avram M Slovic1, Christopher M Summa, James D Lear, William F DeGrado.   

Abstract

Membrane proteins and water-soluble proteins share a similar core. This similarity suggests that it should be possible to water-solubilize membrane proteins by mutating only their lipid-exposed residues. We have developed computational tools to design water-soluble variants of helical membrane proteins, using the pentameric phospholamban (PLB) as our test case. To water-solublize PLB, the membrane-exposed positions were changed to polar or charged amino acids, while the putative core was left unaltered. We generated water-soluble phospholamban (WSPLB), and compared its properties to its predecessor PLB. In aqueous solution, WSPLB mimics all of the reported properties of PLB including oligomerization state, helical structure, and stabilization upon phosphorylation. We also characterized the truncated mutant WSPLB (21-52) comprising only the former transmembrane segment of PLB. This peptide shows a decreased specificity for forming a pentameric oligomerization state.

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Year:  2003        PMID: 12538897      PMCID: PMC2312418          DOI: 10.1110/ps.0226603

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  60 in total

1.  Use of a new label, (13)==(18)O, in the determination of a structural model of phospholamban in a lipid bilayer. Spatial restraints resolve the ambiguity arising from interpretations of mutagenesis data.

Authors:  J Torres; P D Adams; I T Arkin
Journal:  J Mol Biol       Date:  2000-07-21       Impact factor: 5.469

2.  Comparison of helix interactions in membrane and soluble alpha-bundle proteins.

Authors:  Markus Eilers; Ashish B Patel; Wei Liu; Steven O Smith
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

3.  Hydrophobic organization of membrane proteins.

Authors:  D C Rees; L DeAntonio; D Eisenberg
Journal:  Science       Date:  1989-08-04       Impact factor: 47.728

4.  A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil

Authors: 
Journal:  Biochemistry       Date:  1998-09-15       Impact factor: 3.162

5.  Partial volumes and compressibilities of extended polypeptide chains in aqueous solution: additivity scheme and implication of protein unfolding at normal and high pressure.

Authors:  D P Kharakoz
Journal:  Biochemistry       Date:  1997-08-19       Impact factor: 3.162

6.  Phosphorylation-induced structural change in phospholamban and its mutants, detected by intrinsic fluorescence.

Authors:  M Li; R L Cornea; J M Autry; L R Jones; D D Thomas
Journal:  Biochemistry       Date:  1998-05-26       Impact factor: 3.162

7.  Functional reconstitution of recombinant phospholamban with rabbit skeletal Ca(2+)-ATPase.

Authors:  L G Reddy; L R Jones; S E Cala; J J O'Brian; S A Tatulian; D L Stokes
Journal:  J Biol Chem       Date:  1995-04-21       Impact factor: 5.157

Review 8.  Regulation of calcium transport by the ATPase-phospholamban system.

Authors:  M Tada; M Inui
Journal:  J Mol Cell Cardiol       Date:  1983-09       Impact factor: 5.000

9.  Phospholamban phosphorylation in intact ventricles. Phosphorylation of serine 16 and threonine 17 in response to beta-adrenergic stimulation.

Authors:  A D Wegener; H K Simmerman; J P Lindemann; L R Jones
Journal:  J Biol Chem       Date:  1989-07-05       Impact factor: 5.157

10.  Secondary structure of detergent-solubilized phospholamban, a phosphorylatable, oligomeric protein of cardiac sarcoplasmic reticulum.

Authors:  H K Simmerman; D E Lovelace; L R Jones
Journal:  Biochim Biophys Acta       Date:  1989-08-31
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  13 in total

1.  Computational design of water-soluble analogues of the potassium channel KcsA.

Authors:  Avram M Slovic; Hidetoshi Kono; James D Lear; Jeffery G Saven; William F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-06       Impact factor: 11.205

2.  Coiled coils at the edge of configurational heterogeneity. Structural analyses of parallel and antiparallel homotetrameric coiled coils reveal configurational sensitivity to a single solvent-exposed amino acid substitution.

Authors:  Maneesh K Yadav; Luke J Leman; Daniel J Price; Charles L Brooks; C David Stout; M Reza Ghadiri
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

3.  Structure of anti-FLAG M2 Fab domain and its use in the stabilization of engineered membrane proteins.

Authors:  Tarmo P Roosild; Samantha Castronovo; Senyon Choe
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-08-18

4.  Amino acid contribution to protein solubility: Asp, Glu, and Ser contribute more favorably than the other hydrophilic amino acids in RNase Sa.

Authors:  Saul R Trevino; J Martin Scholtz; C Nick Pace
Journal:  J Mol Biol       Date:  2006-10-13       Impact factor: 5.469

5.  Molecular Dynamics Simulation of WSK-3, a Computationally Designed, Water-Soluble Variant of the Integral Membrane Protein KcsA.

Authors:  Jonathan Bronson; One-Sun Lee; Jeffery G Saven
Journal:  Biophys J       Date:  2005-11-18       Impact factor: 4.033

6.  Computational redesign of the lipid-facing surface of the outer membrane protein OmpA.

Authors:  James A Stapleton; Timothy A Whitehead; Vikas Nanda
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-21       Impact factor: 11.205

7.  QTY code enables design of detergent-free chemokine receptors that retain ligand-binding activities.

Authors:  Shuguang Zhang; Fei Tao; Rui Qing; Hongzhi Tang; Michael Skuhersky; Karolina Corin; Lotta Tegler; Asmamaw Wassie; Brook Wassie; Yongwon Kwon; Bernhard Suter; Clemens Entzian; Thomas Schubert; Ge Yang; Jörg Labahn; Jan Kubicek; Barbara Maertens
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-28       Impact factor: 11.205

8.  Empirical estimation of local dielectric constants: Toward atomistic design of collagen mimetic peptides.

Authors:  Douglas H Pike; Vikas Nanda
Journal:  Biopolymers       Date:  2015-07       Impact factor: 2.505

9.  ProDCoNN: Protein design using a convolutional neural network.

Authors:  Yuan Zhang; Yang Chen; Chenran Wang; Chun-Chao Lo; Xiuwen Liu; Wei Wu; Jinfeng Zhang
Journal:  Proteins       Date:  2020-01-06

10.  Solubilization and humanization of paraoxonase-1.

Authors:  Mohosin Sarkar; Christina Keventzidis Harsch; George T Matic; Kathryn Hoffman; Joseph R Norris; Tamara C Otto; David E Lenz; Douglas M Cerasoli; Thomas J Magliery
Journal:  J Lipids       Date:  2012-06-07
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