Literature DB >> 9113981

Is strong hydrogen bonding in the transition state enough to account for the observed rate acceleration in a mutant of papain?

Y J Zheng1, T C Bruice.   

Abstract

Nitriles are good inhibitors for the cysteine protease papain. However, a single amino acid mutation (Gln-19 --> Glu-19) in the active site makes the mutant enzyme a good catalyst for nitrile hydrolysis. A theoretical approach was used to examine the differential transition state stabilization in the papain mutant relative to the wild-type enzyme. Based on this study, we concluded that strong hydrogen bonding in the transition state is responsible for the observed rate enhancement of 4 x 10(5).

Entities:  

Mesh:

Substances:

Year:  1997        PMID: 9113981      PMCID: PMC20714          DOI: 10.1073/pnas.94.9.4285

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

Review 1.  Protein engineering.

Authors:  A Fersht; G Winter
Journal:  Trends Biochem Sci       Date:  1992-08       Impact factor: 13.807

2.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

Review 3.  Engineering new functions and altering existing functions.

Authors:  Z Shao; F H Arnold
Journal:  Curr Opin Struct Biol       Date:  1996-08       Impact factor: 6.809

Review 4.  Short strong hydrogen bonds: can they explain enzymic catalysis?

Authors:  J P Guthrie
Journal:  Chem Biol       Date:  1996-03

Review 5.  Protein engineering for unusual environments.

Authors:  F H Arnold
Journal:  Curr Opin Biotechnol       Date:  1993-08       Impact factor: 9.740

6.  Catalytic mechanism in papain family of cysteine peptidases.

Authors:  A C Storer; R Ménard
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

7.  On low-barrier hydrogen bonds and enzyme catalysis.

Authors:  A Warshel; A Papazyan; P A Kollman
Journal:  Science       Date:  1995-07-07       Impact factor: 47.728

8.  Low-barrier hydrogen bonds and enzymic catalysis.

Authors:  W W Cleland; M M Kreevoy
Journal:  Science       Date:  1994-06-24       Impact factor: 47.728

9.  Primary structure of an aliphatic nitrile-degrading enzyme, aliphatic nitrilase, from Rhodococcus rhodochrous K22 and expression of its gene and identification of its active site residue.

Authors:  M Kobayashi; N Yanaka; T Nagasawa; H Yamada
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

10.  Peptide aldehydes and nitriles as transition state analog inhibitors of cysteine proteases.

Authors:  E Dufour; A C Storer; R Ménard
Journal:  Biochemistry       Date:  1995-07-18       Impact factor: 3.162

View more
  5 in total

1.  Short Carboxylic Acid-Carboxylate Hydrogen Bonds Can Have Fully Localized Protons.

Authors:  Jiusheng Lin; Edwin Pozharski; Mark A Wilson
Journal:  Biochemistry       Date:  2016-12-30       Impact factor: 3.162

2.  Non-enzymatic and enzymatic hydrolysis of alkyl halides: a haloalkane dehalogenation enzyme evolved to stabilize the gas-phase transition state of an SN2 displacement reaction.

Authors:  F C Lightstone; Y J Zheng; A H Maulitz; T C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-05       Impact factor: 11.205

3.  Catalytic role of enzymes: short strong H-bond-induced partial proton shuttles and charge redistributions.

Authors:  K S Kim; K S Oh; J Y Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

4.  A chemometrical study of intermolecular properties of hydrogen-bonded complexes formed by C2H4O...HX and C2H5N...HX with X = F, CN, NC, and CCH.

Authors:  Boaz G Oliveira; Regiane C M U Araújo; Antônio B Carvalho; Mozart N Ramos
Journal:  J Mol Model       Date:  2008-12-13       Impact factor: 1.810

5.  Sequence analysis and structure prediction of type II Pseudomonas sp. USM 4-55 PHA synthase and an insight into its catalytic mechanism.

Authors:  Habibah A Wahab; Nurul Bahiyah Ahmad Khairudin; Mohd Razip Samian; Nazalan Najimudin
Journal:  BMC Struct Biol       Date:  2006-11-01
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.