Literature DB >> 9060411

Linkage map of Syrian hamster with restriction landmark genomic scanning.

H Okuizumi1, T Ohsumi, N Sakaki, H Imoto, Y Mizuno, T Hanami, H Yamashita, M Kamiya, S Takada, A Kitamura, M Muramatsu, M Nishimura, M Mori, Y Matsuda, O Tagaya, Y Okazaki, Y Hayashizaki.   

Abstract

We have constructed the linkage map with precise genetic analysis of the Syrian hamster, Mesocricetus auratus, according to the restriction landmark genomic scanning (RLGS) spot mapping method. Although only 3.2-6.6% of the total RLGS spots between the two strains, ACN and BIO 14.6, showed genetic variance, 572 loci were found to be polymorphic. Out of 569 RLGS loci and 3 other loci, 531 were mapped with the backcross (ACN x BIO 14.6) F1 x BIO 14.6. The cumulative map was 1111.6 cM, indicating that the spots/loci are located throughout the genome at 1.94 cM intervals on average. Thus, RLGS provides us with a rapid tool to construct the genetic map of any species, even if it has less genetic variation.

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Year:  1997        PMID： 9060411     DOI： 10.1007/s003359900370

Source DB:  PubMed          Journal:  Mamm Genome        ISSN： 0938-8990            Impact factor:   2.957


  18 in total

1.  A genomic scanning method for higher organisms using restriction sites as landmarks.

Authors:  I Hatada; Y Hayashizaki; S Hirotsune; H Komatsubara; T Mukai
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

2.  Genomic analysis in maritime pine (Pinus pinaster). Comparison of two RAPD maps using selfed and open-pollinated seeds of the same individual.

Authors:  C Plomion; D M O'Malley; C E Durel
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3.  The reeler gene encodes a protein with an EGF-like motif expressed by pioneer neurons.

Authors:  S Hirotsune; T Takahara; N Sasaki; K Hirose; A Yoshiki; T Ohashi; M Kusakabe; Y Murakami; M Muramatsu; S Watanabe
Journal:  Nat Genet       Date:  1995-05       Impact factor: 38.330

4.  A comprehensive genetic map of the human genome based on 5,264 microsatellites.

Authors:  C Dib; S Fauré; C Fizames; D Samson; N Drouot; A Vignal; P Millasseau; S Marc; J Hazan; E Seboun; M Lathrop; G Gyapay; J Morissette; J Weissenbach
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

5.  A genetic linkage map of the mouse using an expanded production system of restriction landmark genomic scanning (RLGS Ver.1.8).

Authors:  Y Okazaki; H Okuizumi; N Sasaki; T Ohsumi; J Kuromitsu; H Kataoka; M Muramatsu; A Iwadate; N Hirota; M Kitajima
Journal:  Biochem Biophys Res Commun       Date:  1994-12-30       Impact factor: 3.575

Review 6.  A Macintosh program for storage and analysis of experimental genetic mapping data.

Authors:  K F Manly
Journal:  Mamm Genome       Date:  1993       Impact factor: 2.957

7.  A genetic linkage map of the Syrian hamster and localization of cardiomyopathy locus on chromosome 9qa2.1-b1 using RLGS spot-mapping.

Authors:  Y Okazaki; H Okuizumi; T Ohsumi; O Nomura; S Takada; M Kamiya; N Sasaki; Y Matsuda; M Nishimura; O Tagaya; M Muramatsu; Y Hayashizaki
Journal:  Nat Genet       Date:  1996-05       Impact factor: 38.330

8.  A genetic linkage map of the laboratory rat, Rattus norvegicus.

Authors:  H J Jacob; D M Brown; R K Bunker; M J Daly; V J Dzau; A Goodman; G Koike; V Kren; T Kurtz; A Lernmark
Journal:  Nat Genet       Date:  1995-01       Impact factor: 38.330

9.  A single gel analysis of 575 dominant and codominant restriction landmark genomic scanning loci in mice interspecific backcross progeny.

Authors:  H Okuizumi; Y Okazaki; T Ohsumi; T Hanami; Y Mizuno; M Muramatsu; Y Hayashizaki; C Plass; V M Chapman
Journal:  Electrophoresis       Date:  1995-02       Impact factor: 3.535

Review 10.  Genetic mapping of restriction landmark genomic scanning loci in the mouse.

Authors:  H Okuizumi; Y Okazaki; T Ohsumi; Y Hayashizaki; C Plass; V M Chapman
Journal:  Electrophoresis       Date:  1995-02       Impact factor: 3.535
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  4 in total

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Authors:  Beth L Dumont; Bret A Payseur
Journal:  Genetics       Date:  2010-12-13       Impact factor: 4.562

2.  First-generation linkage map of the gray, short-tailed opossum, Monodelphis domestica, reveals genome-wide reduction in female recombination rates.

Authors:  Paul B Samollow; Candace M Kammerer; Susan M Mahaney; Jennifer L Schneider; Scott J Westenberger; John L VandeBerg; Edward S Robinson
Journal:  Genetics       Date:  2004-01       Impact factor: 4.562

3.  Positional syntenic cloning and functional characterization of the mammalian circadian mutation tau.

Authors:  P L Lowrey; K Shimomura; M P Antoch; S Yamazaki; P D Zemenides; M R Ralph; M Menaker; J S Takahashi
Journal:  Science       Date:  2000-04-21       Impact factor: 47.728

4.  A genetic linkage map and comparative mapping of the prairie vole (Microtus ochrogaster) genome.

Authors:  Lisa A McGraw; Jamie K Davis; Larry J Young; James W Thomas
Journal:  BMC Genet       Date:  2011-07-07       Impact factor: 2.797
  4 in total

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