Literature DB >> 7704027

A genetic linkage map of the laboratory rat, Rattus norvegicus.

H J Jacob1, D M Brown, R K Bunker, M J Daly, V J Dzau, A Goodman, G Koike, V Kren, T Kurtz, A Lernmark.   

Abstract

We report the construction of the first complete genetic linkage map of the laboratory rat. By testing 1171 simple sequence length polymorphisms (SSLPs), we have identified 432 markers that show polymorphisms between the SHR and BN rat strains and mapped them in a single (SHR x BN) F2 intercross. The loci define 21 large linkage groups corresponding to the 21 rat chromosomes, together with a pair of nearby markers on chromosome 9 that are not linked to the rest of the map. Because 99.5% of the markers fall into one of the 21 large linkage groups, the maps appear to cover the vast majority of the rat genome. The availability of the map should facilitate whole genome scans for genes underlying qualitative and quantitative traits relevant to mammalian physiology and pathobiology.

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Year:  1995        PMID: 7704027     DOI: 10.1038/ng0195-63

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  84 in total

1.  Rat chromosome 1: regional localization of seven genes (Slc9a3, Srd5a1, Esr, Tcp1, Grik5, Tnnt3, Jak2) and anchoring of the genetic linkage map to the cytogenetic map.

Authors:  C Szpirer; J Szpirer; F Tissir; E Stephanova; P Vanvooren; T W Kurtz; N Iwai; T Inagami; M Pravenec; V Kren; K Klinga-Levan; G Levan
Journal:  Mamm Genome       Date:  1997-09       Impact factor: 2.957

2.  Chromosomal localization of rat hepatocyte growth factor (Hgf) and HGF receptor (Met) and characterization of HGF receptor cDNA.

Authors:  V R Wallenius; H Rawet; S Skrtic; K Helou; Y Qiu; G Levan; S Ekberg; B Carlsson; O G Isaksson; T Nakamura; J O Jansson
Journal:  Mamm Genome       Date:  1997-09       Impact factor: 2.957

3.  Interval mapping and congenic strains for a blood pressure QTL on rat chromosome 13.

Authors:  Q Y Zhang; H Dene; A Y Deng; M R Garrett; H J Jacob; J P Rapp
Journal:  Mamm Genome       Date:  1997-09       Impact factor: 2.957

4.  Selective genotyping with epistasis can be utilized for a major quantitative trait locus mapping in hypertension in rats.

Authors:  Y Ohno; H Tanase; T Nabika; K Otsuka; T Sasaki; T Suzawa; T Morii; Y Yamori; T Saruta
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

5.  Conservation of the rat X chromosome gene order in rodent species.

Authors:  A Kuroiwa; K Tsuchiya; T Watanabe; H Hishigaki; E Takahashi; T Namikawa; Y Matsuda
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

6.  Identification of candidate disease genes by EST alignments, synteny, and expression and verification of Ensembl genes on rat chromosome 1q43-54.

Authors:  Ursula Vitt; Darryl Gietzen; Kristian Stevens; Jim Wingrove; Shanya Becha; Sean Bulloch; John Burrill; Narinder Chawla; Jennifer Chien; Matthew Crawford; Craig Ison; Liam Kearney; Mary Kwong; Joe Park; Jennifer Policky; Mark Weiler; Renee White; Yuming Xu; Sue Daniels; Howard Jacob; Michael I Jensen-Seaman; Jozef Lazar; Laura Stuve; Jeanette Schmidt
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

7.  Quantitative trait loci influencing cholesterol and phospholipid phenotypes map to chromosomes that contain genes regulating blood pressure in the spontaneously hypertensive rat.

Authors:  A Bottger; H A van Lith; V Kren; D Krenová; V Bílá; J Vorlícek; V Zídek; A Musilová; M Zdobinská; J M Wang; B F van Zutphen; T W Kurtz; M Pravenec
Journal:  J Clin Invest       Date:  1996-08-01       Impact factor: 14.808

8.  Linkage mapping of the mixed-lineage leukemia (Mll) gene to rat chromosome 8.

Authors:  M Pravenec; J Wang; V Kren; E St Lezin
Journal:  Mamm Genome       Date:  1997-08       Impact factor: 2.957

Review 9.  Mapping the mouse genome: current status and future prospects.

Authors:  W F Dietrich; N G Copeland; D J Gilbert; J C Miller; N A Jenkins; E S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-21       Impact factor: 11.205

10.  Hepatocyte nuclear factor 6: organization and chromosomal assignment of the rat gene and characterization of its promoter.

Authors:  M Rastegar; C Szpirer; G G Rousseau; F P Lemaigre
Journal:  Biochem J       Date:  1998-09-15       Impact factor: 3.857

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